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PI0011436 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011436
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr07:18347597..18349824
RNA-Seq ExpressionPI0011436
SyntenyPI0011436
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045802.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]4.5e-1377.08Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +GMLS VY+HNALINAY  FGFVQCAYQ+FDEMSN TLV+WN +IGG+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

KAG6571425.1 Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]8.8e-0944.44Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSKGSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDL
        +G+LS V + NALINAY   GFVQCA QLFDEMS+ TLV+WN +IGG+ +       G    +  L  D     + +W F    F+L+ L
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSKGSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDL

XP_004148060.2 pentatricopeptide repeat-containing protein At1g08070, chloroplastic [Cucumis sativus]4.5e-1377.08Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +GMLS VY+HNALINAY  FGFVQCAYQ+FDEMSN TLV+WN +IGG+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

XP_008457803.1 PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Cucumis melo]4.5e-1377.08Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +GMLS VY+HNALINAY  FGFVQCAYQ+FDEMSN TLV+WN +IGG+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

XP_038900653.1 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Benincasa hispida]1.4e-0966Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQ
        +G+LS V + NALIN Y  FGFVQCA QLFDEMSN TLV+WN +IGG+ +
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQ

TrEMBL top hitse value%identityAlignment
A0A0A0LLZ3 Uncharacterized protein2.2e-1377.08Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +GMLS VY+HNALINAY  FGFVQCAYQ+FDEMSN TLV+WN +IGG+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

A0A1S3C6H9 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like2.2e-1377.08Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +GMLS VY+HNALINAY  FGFVQCAYQ+FDEMSN TLV+WN +IGG+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

A0A5A7TQY7 Pentatricopeptide repeat-containing protein2.2e-1377.08Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +GMLS VY+HNALINAY  FGFVQCAYQ+FDEMSN TLV+WN +IGG+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

A0A6J1EJQ7 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like4.3e-0944.44Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSKGSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDL
        +G+LS V + NALINAY   GFVQCA QLFDEMS+ TLV+WN +IGG+ +       G    +  L  D     + +W F    F+L+ L
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSKGSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDL

A0A6J1I2L8 pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like1.2e-0843.33Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSKGSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDL
        +G+LS V + NALIN Y   GFVQCA QLFDEMS+ TLV+WN +IGG+ +       G    +  L  D     + +W F    F+L+ L
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSKGSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDL

SwissProt top hitse value%identityAlignment
Q9LU94 Putative pentatricopeptide repeat-containing protein At3g259706.1e-0540.43Show/hide
Query:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        G +S +Y+ N ++++Y+ FGF+  A  LFDEM     V+WN +I G+
Subjt:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

Arabidopsis top hitse value%identityAlignment
AT1G16480.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.8e-0534Show/hide
Query:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQ
        G+LS VY+  A+++ Y  +G V C+ ++F+EM +  +V+W  L+ G+  +
Subjt:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQ

AT1G16480.2 Tetratricopeptide repeat (TPR)-like superfamily protein4.8e-0534Show/hide
Query:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQ
        G+LS VY+  A+++ Y  +G V C+ ++F+EM +  +V+W  L+ G+  +
Subjt:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQ

AT2G40720.1 Tetratricopeptide repeat (TPR)-like superfamily protein1.4e-0439.58Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        +G+ S  ++ NALI+ YV  GF + A  +F +M + +L+TWN +I G+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

AT3G03580.1 Tetratricopeptide repeat (TPR)-like superfamily protein8.2e-0543.75Show/hide
Query:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        MG  S +++ NAL++ Y   G +  A Q+FDEM    LV+WN LI G+
Subjt:  MGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW

AT3G25970.1 Pentatricopeptide repeat (PPR) superfamily protein4.4e-0640.43Show/hide
Query:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW
        G +S +Y+ N ++++Y+ FGF+  A  LFDEM     V+WN +I G+
Subjt:  GMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTGCACAATCTTCTATTCTAATGGCGACATCATCTATAGAGTCGAAAACTACAACAGAAAATGCAGTAGCGAAGTATTTCTCGTGGATCTCAGAGGCAAAGTTCTG
TTCACCATCAGAAAAAGGAAGCTTTTGTTGTCCATTGCCAAGCTATTCGATGGGGATGTTGTCTCAGGTGTATATACATAATGCTCTGATTAATGCTTATGTTGCTTTTG
GTTTTGTTCAATGTGCATACCAACTGTTTGATGAAATGTCTAATACAACTCTGGTGACTTGGAATTGGTTGATTGGTGGTTGGAAGCAGCAAGCAACAAAAAGAAGTAAA
GGTTCATCAACCCCATCTGTTCCTTTATCAGGTGATCAAGGAGTTGTAAATCTAAATTTATGGAGTTTTGACACCAAAAGATTCTCACTATTGGACTTGGAGATTAGATT
TGTGGAGACAATGAGTAGAGCAGTTGAAGAGATCGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTGCACAATCTTCTATTCTAATGGCGACATCATCTATAGAGTCGAAAACTACAACAGAAAATGCAGTAGCGAAGTATTTCTCGTGGATCTCAGAGGCAAAGTTCTG
TTCACCATCAGAAAAAGGAAGCTTTTGTTGTCCATTGCCAAGCTATTCGATGGGGATGTTGTCTCAGGTGTATATACATAATGCTCTGATTAATGCTTATGTTGCTTTTG
GTTTTGTTCAATGTGCATACCAACTGTTTGATGAAATGTCTAATACAACTCTGGTGACTTGGAATTGGTTGATTGGTGGTTGGAAGCAGCAAGCAACAAAAAGAAGTAAA
GGTTCATCAACCCCATCTGTTCCTTTATCAGGTGATCAAGGAGTTGTAAATCTAAATTTATGGAGTTTTGACACCAAAAGATTCTCACTATTGGACTTGGAGATTAGATT
TGTGGAGACAATGAGTAGAGCAGTTGAAGAGATCGAATGA
Protein sequenceShow/hide protein sequence
MVAQSSILMATSSIESKTTTENAVAKYFSWISEAKFCSPSEKGSFCCPLPSYSMGMLSQVYIHNALINAYVAFGFVQCAYQLFDEMSNTTLVTWNWLIGGWKQQATKRSK
GSSTPSVPLSGDQGVVNLNLWSFDTKRFSLLDLEIRFVETMSRAVEEIE