CuGenDBv2

Gene ID	PI0011442
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr03:18008376..18009060
RNA-Seq Expression	PI0011442
Synteny	PI0011442
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR002156 - Ribonuclease H domain IPR012337 - Ribonuclease H-like superfamily IPR036397 - Ribonuclease H superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

5.2e-89

81.22

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIK SA  DHLAAQPV D E MR+DFPD+NIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PEGKVFPLTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET  AKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

KAA0046213.1 uncharacterized protein E6C27_scaffold284G00010 [Cucumis melo var. makuwa]

1.8e-89

81.22

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E MR+DFPD+NIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PEGKVFPLTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET  AKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LA+MFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]

1.8e-89

81.69

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MD IKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E MR+DFPD+NIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PEGKVFPLTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET DAKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]

8.9e-89

81.22

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E M VDFPDENIFLVE +A DHETWIMLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY----MKL---------ALWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        P+GKVFPLTAKLCFEC HNIAEY    M L          L VL DSMLV HQV+EEWET DAKLVPYSQY+ KLSQNFEKISFDHVHRE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY----MKL---------ALWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMF+LNL+ EL
Subjt:  LAVMFDLNLKCEL

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]

8.9e-89

81.22

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E M VDFPDENIFLVE +A DHETWIMLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY----MKL---------ALWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        P+GKVFPLTAKLCFEC HNIAEY    M L          L VL DSMLV HQV+EEWET DAKLVPYSQY+ KLSQNFEKISFDHVHRE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY----MKL---------ALWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMF+LNL+ EL
Subjt:  LAVMFDLNLKCEL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T0A1 Ribonuclease H

1.8e-87

80.75

Show/hide

Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E MR+DF DENIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
         EGKVF LTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWE  DAKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

A0A5A7T7R4 Ribonuclease H

2.5e-89

81.22

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIK SA  DHLAAQPV D E MR+DFPD+NIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PEGKVFPLTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET  AKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

A0A5A7TRL7 Ribonuclease H

8.7e-90

81.22

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E MR+DFPD+NIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PEGKVFPLTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET  AKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LA+MFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

A0A5A7USZ9 RNase H domain-containing protein

2.1e-88

80.75

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Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MDPIKYIFEKPSLSGRIAKWQVLLSE+DIVYVTKKAIKGSA  +HLAAQPV D E MR+DFPDENIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PE KVFPL AKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET DAKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

A0A5D3DMD2 Ribonuclease H

8.7e-90

81.69

Show/hide

Query:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS
        MD IKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSA  DHLAAQPV D E MR+DFPD+NIFLVE+NARDHETW MLF+GASNELGH IGVVLIS
Subjt:  MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLIS

Query:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT
        PEGKVFPLTAKLCFEC HNIAEY      +++A       L VL DSMLV HQV+EEWET DAKLVPYSQYVTKLSQNFEKISFDHV RE+NRMADA+AT
Subjt:  PEGKVFPLTAKLCFECIHNIAEY------MKLA-------LWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVAT

Query:  LAVMFDLNLKCEL
        LAVMFDLNL+ EL
Subjt:  LAVMFDLNLKCEL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGACCCAATAAAATACATTTTTGAAAAACCATCATTATCTGGGAGGATTGCAAAATGGCAAGTTCTGTTGTCAGAATATGATATTGTTTATGTTACTAAAAAGGCAAT
AAAGGGAAGTGCATTTTTCGATCATTTAGCTGCCCAACCAGTAGTAGATTGCGAGTCTATGAGGGTTGATTTTCCTGATGAAAATATATTTCTAGTTGAAGAGAATGCTC
GAGATCATGAGACATGGATTATGCTTTTTAATGGTGCCTCAAATGAGTTGGGACATAGGATTGGAGTTGTACTAATTTCACCAGAAGGAAAAGTATTCCCCTTAACGGCT
AAGTTATGTTTTGAGTGCATTCACAATATCGCTGAGTATATGAAGCTTGCATTATGGGTTTTGAGTGACTCAATGTTAGTAACACATCAAGTCAGGGAAGAATGGGAAAC
AATAGATGCTAAATTGGTGCCTTACAGCCAATACGTTACAAAATTATCTCAAAACTTTGAGAAAATTTCATTTGATCATGTTCATAGGGAGAACAATCGAATGGCAGATG
CAGTAGCCACCTTGGCAGTGATGTTTGATCTTAATCTTAAATGTGAACTTATCCAATCTAAATTACAAAGTGAGATTCGTCGGCATATTGTATGA

mRNA sequence

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Protein sequence

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MDPIKYIFEKPSLSGRIAKWQVLLSEYDIVYVTKKAIKGSAFFDHLAAQPVVDCESMRVDFPDENIFLVEENARDHETWIMLFNGASNELGHRIGVVLISPEGKVFPLTA
KLCFECIHNIAEYMKLALWVLSDSMLVTHQVREEWETIDAKLVPYSQYVTKLSQNFEKISFDHVHRENNRMADAVATLAVMFDLNLKCELIQSKLQSEIRRHIV

PI0011442 (gene) of Melon (PI 482460) v1 genome