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PI0011463 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011463
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionEncodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: (RGF1), (RGF2), (RGF3), (RGF4), (RGF5), (RGF6), (RGF7), (RGF8) and (RGF9).
Genome locationchr06:28567808..28568776
RNA-Seq ExpressionPI0011463
SyntenyPI0011463
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_011650407.1 uncharacterized protein LOC105434783 [Cucumis sativus]4.9e-4782.31Show/hide
Query:  MAMPCLFLILLFFLYTLHACDASRLRFFESSNFVSRI-ELHSISQGIWT--DRQERSFYKNNSDKVPH-KEIIVGIEMLKGMKKDGSRLVMEFPMKAKVM
        MAMP  FLILLFF  TLHACDASRLRFF+SSNFVSRI ELHS+SQGIW+    QE SF KNN+D + H KE I+GIEMLKGMK+DGSRLVMEFPMK KVM
Subjt:  MAMPCLFLILLFFLYTLHACDASRLRFFESSNFVSRI-ELHSISQGIWT--DRQERSFYKNNSDKVPH-KEIIVGIEMLKGMKKDGSRLVMEFPMKAKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_022154042.1 uncharacterized protein LOC111021396 [Momordica charantia]1.1e-2260.77Show/hide
Query:  MAMPCLFLILLFFLYTLHACDA-SRLRFFESSNFVSRIELHS-ISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPM--KAKVM
        MA P L  ILL  L TLHACDA  RL+ FE SN VSR+ L + I Q   TD+ ERS  KN   KV    + +GI +LKGMKK   RL MEF M  K K+M
Subjt:  MAMPCLFLILLFFLYTLHACDA-SRLRFFESSNFVSRIELHS-ISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPM--KAKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        + +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_023540680.1 uncharacterized protein LOC111800973 [Cucurbita pepo subsp. pepo]1.4e-2054.81Show/hide
Query:  MAMPCLFLILLFFLYT-LHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMK-------
        M MP  F + L FL T LHACDA  L+   S    SR+E   IS G  T++ ERS  ++ S+ V   E  VGIE+LKGMKK   RL ME P++       
Subjt:  MAMPCLFLILLFFLYT-LHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMK-------

Query:  -AKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
          KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  -AKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905996.1 uncharacterized protein LOC120091906 isoform X1 [Benincasa hispida]1.1e-4682.4Show/hide
Query:  MPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLK-GMKKDGSRLVMEFPMKAKVMNSKEN
        MP LFLILL F  TLHAC+A  LRFFESS+FVSRIE HSISQGIW D+ ERSF ++NSDK+ +KEIIVGIEMLK GMKK GSRLVMEFPMK KV+NSKEN
Subjt:  MPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLK-GMKKDGSRLVMEFPMKAKVMNSKEN

Query:  EVGEDMVVMDYAQPHRKPPIHNEKP
        EVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEKP

XP_038905997.1 uncharacterized protein LOC120091906 isoform X2 [Benincasa hispida]4.5e-4883.06Show/hide
Query:  MPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMKAKVMNSKENE
        MP LFLILL F  TLHAC+A  LRFFESS+FVSRIE HSISQGIW D+ ERSF ++NSDK+ +KEIIVGIEMLKGMKK GSRLVMEFPMK KV+NSKENE
Subjt:  MPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMKAKVMNSKENE

Query:  VGEDMVVMDYAQPHRKPPIHNEKP
        VGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  VGEDMVVMDYAQPHRKPPIHNEKP

TrEMBL top hitse value%identityAlignment
A0A0A0L298 Uncharacterized protein2.4e-4782.31Show/hide
Query:  MAMPCLFLILLFFLYTLHACDASRLRFFESSNFVSRI-ELHSISQGIWT--DRQERSFYKNNSDKVPH-KEIIVGIEMLKGMKKDGSRLVMEFPMKAKVM
        MAMP  FLILLFF  TLHACDASRLRFF+SSNFVSRI ELHS+SQGIW+    QE SF KNN+D + H KE I+GIEMLKGMK+DGSRLVMEFPMK KVM
Subjt:  MAMPCLFLILLFFLYTLHACDASRLRFFESSNFVSRI-ELHSISQGIWT--DRQERSFYKNNSDKVPH-KEIIVGIEMLKGMKKDGSRLVMEFPMKAKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A2C9WK42 Uncharacterized protein7.8e-0634.03Show/hide
Query:  LFLILLFFLYTLHACD-------ASRLRFFESSNFVSRIELHS----------ISQGIWTDRQE------RSFYKNNSDKVPHKEIIVGIEMLKGMKKDG
        L LI L   ++LHAC+       A   R  + +  V R+ L+           I +     R+E      R     NS    HK I+     L+   K  
Subjt:  LFLILLFFLYTLHACD-------ASRLRFFESSNFVSRIELHS----------ISQGIWTDRQE------RSFYKNNSDKVPHKEIIVGIEMLKGMKKDG

Query:  SRLVMEFPMKAKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
                   K + S EN++ ED+VVMDYAQPHRKPPIHNEKP
Subjt:  SRLVMEFPMKAKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A2G9HFQ2 Uncharacterized protein1.7e-0535.21Show/hide
Query:  MPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQER---SFYKNNSDKVPHKEIIVGI----------------EMLKG-MKKDG
        M  LF ++L +LY LHAC A  L  ++  + V+++EL   S+ + T   ER   +  K  +++     + +G                 E +KG  KK  
Subjt:  MPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQER---SFYKNNSDKVPHKEIIVGI----------------EMLKG-MKKDG

Query:  SRLVMEFPMKAKVMNSKENEVGEDMVVMDYAQPHRKPPIHNE
         RL +E P   + MNSK+N   +D+  MDYAQPHRKPPIHN+
Subjt:  SRLVMEFPMKAKVMNSKENEVGEDMVVMDYAQPHRKPPIHNE

A0A6J1DKL1 uncharacterized protein LOC1110213965.4e-2360.77Show/hide
Query:  MAMPCLFLILLFFLYTLHACDA-SRLRFFESSNFVSRIELHS-ISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPM--KAKVM
        MA P L  ILL  L TLHACDA  RL+ FE SN VSR+ L + I Q   TD+ ERS  KN   KV    + +GI +LKGMKK   RL MEF M  K K+M
Subjt:  MAMPCLFLILLFFLYTLHACDA-SRLRFFESSNFVSRIELHS-ISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPM--KAKVM

Query:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP
        + +ENEVGEDMVVMDYAQPHRKPPIHN+KP
Subjt:  NSKENEVGEDMVVMDYAQPHRKPPIHNEKP

A0A6J1KZM9 uncharacterized protein LOC1114985211.9e-2054.74Show/hide
Query:  MAMP-CLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMK-------
        M MP  LFL LLF    LHACDA  L+   S    SR+E   IS G   D+ +RS  K+ S++V   E  VGIE+LKGMKK   RL ME P++       
Subjt:  MAMP-CLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMK-------

Query:  ---AKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP
            KV+NS+ENEVGEDMVVMDYAQPHRKPPIHN KP
Subjt:  ---AKVMNSKENEVGEDMVVMDYAQPHRKPPIHNEKP

SwissProt top hitse value%identityAlignment
Q93VK8 Protein GOLVEN 16.4e-0583.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK

Arabidopsis top hitse value%identityAlignment
AT4G16515.1 Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9).4.5e-0683.33Show/hide
Query:  EVGEDMVVMDYAQPHRKPPIHNEK
        E GE++VVMDY QPHRKPPIHNEK
Subjt:  EVGEDMVVMDYAQPHRKPPIHNEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTATGCCTTGTTTGTTTCTCATTCTCTTATTCTTCTTATATACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCGAGAGTTCGAATTTTGTTTCCAGGAT
TGAACTGCATTCGATCTCTCAAGGGATTTGGACAGATCGGCAGGAGAGAAGTTTTTACAAAAACAATAGTGACAAGGTTCCTCATAAGGAGATTATTGTTGGGATTGAAA
TGTTAAAGGGAATGAAGAAGGATGGAAGCAGATTGGTAATGGAATTTCCAATGAAAGCAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATG
GATTATGCACAACCCCATAGAAAACCTCCTATTCACAATGAAAAACCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTATGCCTTGTTTGTTTCTCATTCTCTTATTCTTCTTATATACTTTGCATGCATGTGACGCTAGTCGTCTTCGATTCTTCGAGAGTTCGAATTTTGTTTCCAGGAT
TGAACTGCATTCGATCTCTCAAGGGATTTGGACAGATCGGCAGGAGAGAAGTTTTTACAAAAACAATAGTGACAAGGTTCCTCATAAGGAGATTATTGTTGGGATTGAAA
TGTTAAAGGGAATGAAGAAGGATGGAAGCAGATTGGTAATGGAATTTCCAATGAAAGCAAAAGTGATGAATTCTAAGGAAAATGAAGTTGGAGAAGACATGGTAGTGATG
GATTATGCACAACCCCATAGAAAACCTCCTATTCACAATGAAAAACCCTAG
Protein sequenceShow/hide protein sequence
MAMPCLFLILLFFLYTLHACDASRLRFFESSNFVSRIELHSISQGIWTDRQERSFYKNNSDKVPHKEIIVGIEMLKGMKKDGSRLVMEFPMKAKVMNSKENEVGEDMVVM
DYAQPHRKPPIHNEKP