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PI0011467 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011467
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:13433709..13434208
RNA-Seq ExpressionPI0011467
SyntenyPI0011467
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]8.5e-2558.42Show/hide
Query:  SSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTL
        SSYNQI  TLD++A NNEEWD+D FD+ RGGRG+ +EG+D+NV+VV QGQMTAMNNLL+ M   QVNAA  S  +  Q+D++GC+ +GSPH  D   L +
Subjt:  SSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTL

Query:  K
        +
Subjt:  K

KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]1.0e-2252.5Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRR---GGRGRGDEG
        F+ +DRENL+DAWS  KR+VKAC H+GI +C+LME            T D VFVGG+L++SYNQ K  LDTM SN++E  +D   +++     RGR DEG
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRR---GGRGRGDEG

Query:  MDKNVVVVLQGQMTAMNNLL
        MD+N +V LQGQ+T MN LL
Subjt:  MDKNVVVVLQGQMTAMNNLL

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]1.4e-3550.93Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNR------RGGRG
        M+F+Q+DRENL D W RFKRM+K CPH+ IPEC+LME            +A+ VF GGML+SSYNQIK  LDTMASN++EW ++ F +R      +G RG
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNR------RGGRG

Query:  RGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTD
        R ++G+D +++V LQGQ+  M N+L+SMA+ QVN    S+    Q+++MGCVG  +PHNT+
Subjt:  RGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTD

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]2.2e-1736.25Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDK
        F+Q+DR+NLHDAWS FKRMVKAC H+GI + +LME            +AD++F+GG+L+SSYNQIKA LD+MA+N+++                      
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDK

Query:  NVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLK
                                      S HA   +++M C G G PHNTD   L L+
Subjt:  NVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLK

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]6.7e-3853.61Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMET------------ADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGM
        M F+Q+D+EN+HD WSRFKR+VKACP +GIPEC+ ME              + +FVGGML+SSYNQIKATLD+M++N++EWD+  F +R   RGR  EG+
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMET------------ADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGM

Query:  DKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLKQSRS
        DK+VVVVLQGQM AMNNLL+SM +SQVNAA   +HA  Q++           +  HAH  +K SR+
Subjt:  DKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLKQSRS

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein3.2e-3853.61Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMET------------ADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGM
        M F+Q+D+EN+HD WSRFKR+VKACP +GIPEC+ ME              + +FVGGML+SSYNQIKATLD+M++N++EWD+  F +R   RGR  EG+
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMET------------ADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGM

Query:  DKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLKQSRS
        DK+VVVVLQGQM AMNNLL+SM +SQVNAA   +HA  Q++           +  HAH  +K SR+
Subjt:  DKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLKQSRS

A0A5A7TUE1 Uncharacterized protein5.0e-2352.5Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRR---GGRGRGDEG
        F+ +DRENL+DAWS  KR+VKAC H+GI +C+LME            T D VFVGG+L++SYNQ K  LDTM SN++E  +D   +++     RGR DEG
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRR---GGRGRGDEG

Query:  MDKNVVVVLQGQMTAMNNLL
        MD+N +V LQGQ+T MN LL
Subjt:  MDKNVVVVLQGQMTAMNNLL

A0A5A7V1F3 Retrotrans_gag domain-containing protein1.1e-1736.25Show/hide
Query:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDK
        F+Q+DR+NLHDAWS FKRMVKAC H+GI + +LME            +AD++F+GG+L+SSYNQIKA LD+MA+N+++                      
Subjt:  FQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDK

Query:  NVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLK
                                      S HA   +++M C G G PHNTD   L L+
Subjt:  NVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLK

A0A5D3CC26 Uncharacterized protein6.8e-3650.93Show/hide
Query:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNR------RGGRG
        M+F+Q+DRENL D W RFKRM+K CPH+ IPEC+LME            +A+ VF GGML+SSYNQIK  LDTMASN++EW ++ F +R      +G RG
Subjt:  MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILME------------TADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNR------RGGRG

Query:  RGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTD
        R ++G+D +++V LQGQ+  M N+L+SMA+ QVN    S+    Q+++MGCVG  +PHNT+
Subjt:  RGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTD

A0A5D3CSC7 Uncharacterized protein4.1e-2558.42Show/hide
Query:  SSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTL
        SSYNQI  TLD++A NNEEWD+D FD+ RGGRG+ +EG+D+NV+VV QGQMTAMNNLL+ M   QVNAA  S  +  Q+D++GC+ +GSPH  D   L +
Subjt:  SSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDKNVVVVLQGQMTAMNNLLKSMAISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTL

Query:  K
        +
Subjt:  K

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTCCAGCAGAAGGATAGAGAAAACCTACATGATGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCCCCACAATGGCATTCCTGAGTGCATATTGATGGA
GACTGCTGATGCTGTGTTTGTAGGTGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACACTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATT
TCGACAATCGCCGAGGAGGACGAGGAAGAGGCGATGAAGGTATGGATAAGAACGTTGTGGTGGTGTTGCAGGGACAAATGACTGCGATGAACAATTTACTCAAATCTATG
GCAATATCGCAAGTCAATGCCGCAGGAGGCTCTATGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGATACGGCAGTCCTCATAATACTGACCATGCCCACTT
AACACTGAAACAGTCGCGTTCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTCCAGCAGAAGGATAGAGAAAACCTACATGATGCGTGGAGTAGGTTTAAGAGGATGGTGAAAGCATGCCCCCACAATGGCATTCCTGAGTGCATATTGATGGA
GACTGCTGATGCTGTGTTTGTAGGTGGTATGCTAAAGAGCTCCTACAACCAGATTAAGGCGACACTGGACACAATGGCCAGCAATAATGAAGAATGGGATGAAGATGATT
TCGACAATCGCCGAGGAGGACGAGGAAGAGGCGATGAAGGTATGGATAAGAACGTTGTGGTGGTGTTGCAGGGACAAATGACTGCGATGAACAATTTACTCAAATCTATG
GCAATATCGCAAGTCAATGCCGCAGGAGGCTCTATGCACGCGGCAAACCAAATTGATGATATGGGATGTGTGGGATACGGCAGTCCTCATAATACTGACCATGCCCACTT
AACACTGAAACAGTCGCGTTCGTAA
Protein sequenceShow/hide protein sequence
MSFQQKDRENLHDAWSRFKRMVKACPHNGIPECILMETADAVFVGGMLKSSYNQIKATLDTMASNNEEWDEDDFDNRRGGRGRGDEGMDKNVVVVLQGQMTAMNNLLKSM
AISQVNAAGGSMHAANQIDDMGCVGYGSPHNTDHAHLTLKQSRS