CuGenDBv2

Gene ID	PI0011480
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr04:14854762..14855361
RNA-Seq Expression	PI0011480
Synteny	PI0011480
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

6.6e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

6.6e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

6.6e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

KAA0061339.1 gag/pol protein [Cucumis melo var. makuwa]

6.6e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA+QT+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLN+MV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

6.6e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

3.2e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

A0A5A7TU93 Gag/pol protein

3.2e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

A0A5A7TWB9 Gag/pol protein

3.2e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

A0A5A7V6N0 Gag/pol protein

3.2e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA+QT+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLN+MV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

A0A5D3CPJ6 Gag/pol protein

3.2e-70

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Query:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF
        +EECP  P  NA++T+++ Y+RW KANEKAR YILAS+S+VL+KKHESM+TAR+IM+SLQEMFGQ S QI+H+A+KY+YNARM EG SV E VLNMMV F
Subjt:  MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQF

Query:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK
        NVAE NGAVIDE SQVSFILESLP+SFLQFR NAVMNKI YT+TTLLNELQ F+SLMK KGQK GEANVA S ++F +GS+SGTKS PSSSG KK +KKK
Subjt:  NVAETNGAVIDEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHS-KRFQKGSSSGTKSAPSSSGTKKIQKKK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCATCAAGGATGCATATGACCGCTGGACAAAGGCCAATGAAAAGGCCCGAGTCTACATCTTGGCTAG
TATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGAACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATCCGGCACGAGG
CTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTGGAGAAGATGTTCTCAACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGGTCATT
GACGAGCAAAGTCAGGTATCCTTTATCTTAGAATCTCTTCCGAAGAGCTTCCTTCAATTCCGTATCAATGCGGTTATGAACAAGATAGAGTATACCATGACCACCCTCCT
TAACGAGTTGCAGAATTTTCAGTCTCTTATGAAAAATAAGGGACAGAAAGAAGGAGAGGCAAATGTTGCCCATTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCA
AGTCTGCACCTTCATCTTCTGGGACTAAGAAAATCCAGAAGAAGAAATGA

mRNA sequence

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Protein sequence

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MEECPPSPVRNASQTIKDAYDRWTKANEKARVYILASMSDVLSKKHESMVTARQIMNSLQEMFGQPSIQIRHEAIKYVYNARMKEGQSVGEDVLNMMVQFNVAETNGAVI
DEQSQVSFILESLPKSFLQFRINAVMNKIEYTMTTLLNELQNFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGTKKIQKKK

PI0011480 (gene) of Melon (PI 482460) v1 genome