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PI0011536 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011536
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr06:8821130..8821355
RNA-Seq ExpressionPI0011536
SyntenyPI0011536
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043083.1 uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa]3.2e-1264Show/hide
Query:  MSVIQTQIHQEVVGDKIIR---------------DRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
        + VIQTQIHQEV  D IIR               DRLNVIIVINS I+ GNAEI+LKKMQI LRKMKK+VI HCF
Subjt:  MSVIQTQIHQEVVGDKIIR---------------DRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
KAA0058597.1 retrotransposon protein [Cucumis melo var. makuwa]1.9e-0451.67Show/hide
Query:  SVIQTQIHQ-EVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
        ++I+ Q+ + +++   + +D LNVIIVIN  II GNAEI+ KKMQ  L+ MKK+VI HCF
Subjt:  SVIQTQIHQ-EVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
XP_031737535.1 uncharacterized protein LOC105435097 [Cucumis sativus]2.2e-0585.71Show/hide
Query:  RDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKK
        +DRLNVIIVIN  IIHGNAEI+LKKMQI LRKMKK
Subjt:  RDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKK
TrEMBL top hitse value%identityAlignment
A0A5A7TIB1 Uncharacterized protein1.6e-1264Show/hide
Query:  MSVIQTQIHQEVVGDKIIR---------------DRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
        + VIQTQIHQEV  D IIR               DRLNVIIVINS I+ GNAEI+LKKMQI LRKMKK+VI HCF
Subjt:  MSVIQTQIHQEVVGDKIIR---------------DRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
A0A5A7UV40 Retrotransposon protein9.1e-0551.67Show/hide
Query:  SVIQTQIHQ-EVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
        ++I+ Q+ + +++   + +D LNVIIVIN  II GNAEI+ KKMQ  L+ MKK+VI HCF
Subjt:  SVIQTQIHQ-EVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCGTAATTCAAACTCAAATTCATCAAGAGGTCGTGGGAGACAAAATTATTCGAGATAGGTTGAATGTTATAATTGTCATAAATTCTACTATTATTCATGGGAATGC
AGAAATAAAGTTGAAGAAAATGCAAATTACACTGAGAAAGATGAAGAAATCAGTGATTCATCATTGCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCGTAATTCAAACTCAAATTCATCAAGAGGTCGTGGGAGACAAAATTATTCGAGATAGGTTGAATGTTATAATTGTCATAAATTCTACTATTATTCATGGGAATGC
AGAAATAAAGTTGAAGAAAATGCAAATTACACTGAGAAAGATGAAGAAATCAGTGATTCATCATTGCTTCTAG
Protein sequenceShow/hide protein sequence
MSVIQTQIHQEVVGDKIIRDRLNVIIVINSTIIHGNAEIKLKKMQITLRKMKKSVIHHCF