CuGenDBv2

Gene ID	PI0011563
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr05:8469403..8469966
RNA-Seq Expression	PI0011563
Synteny	PI0011563
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0042063.1 retrotransposon protein [Cucumis melo var. makuwa]

9.8e-48

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MA+K+PRC ++ + +I CRIK +K+TFQAIAKM GP+CS F WNDE ++II EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVPRGFKGFPADYGNDTE-IPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN   G+  F  D G++ E  P +YSQG+D+S DD+  +R   +SEGRIGSSGSKRKR
Subjt:  VLSNVPRGFKGFPADYGNDTE-IPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

KAA0042500.1 retrotransposon protein [Cucumis melo var. makuwa]

9.1e-46

58.13

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIA+M GP+CS F WNDE + I+ EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+ + P +YSQG+D+S DD+  +R   +SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

KAA0064810.1 retrotransposon protein [Cucumis melo var. makuwa]

1.4e-46

58.75

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIAKM GP+CS F WNDE + I+ EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+ + P +Y+QG+D+S DD+  +R  H+SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

KAA0066208.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-45

58.75

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIA+M GP+CS F WNDE + II EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+ + P +YSQG+D+S DD+  +R   +SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

TYK20986.1 retrotransposon protein [Cucumis melo var. makuwa]

1.6e-45

58.13

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIA+M GP+CS F WNDE + I+ EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+  +P +YSQG+D+S DD+  +R   +SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TGP1 Retrotransposon protein

4.4e-46

58.13

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIA+M GP+CS F WNDE + I+ EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+ + P +YSQG+D+S DD+  +R   +SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

A0A5A7VCA3 Retrotransposon protein

6.8e-47

58.75

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIAKM GP+CS F WNDE + I+ EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+ + P +Y+QG+D+S DD+  +R  H+SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

A0A5A7VES2 Retrotransposon protein

7.5e-46

58.75

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIA+M GP+CS F WNDE + II EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+ + P +YSQG+D+S DD+  +R   +SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

A0A5D3D2M5 Retrotransposon protein

4.7e-48

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MA+K+PRC ++ + +I CRIK +K+TFQAIAKM GP+CS F WNDE ++II EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVPRGFKGFPADYGNDTE-IPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN   G+  F  D G++ E  P +YSQG+D+S DD+  +R   +SEGRIGSSGSKRKR
Subjt:  VLSNVPRGFKGFPADYGNDTE-IPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

A0A5D3DBP2 Retrotransposon protein

7.5e-46

58.13

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Query:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD
        MAEK+P C ++ + +I CRIK +K+TFQAIA+M GP+CS F WNDE + I+ EK+LFDNWV+SHPAAKG LNKPF +YD + YVFG+DRAT    E F D
Subjt:  MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTD

Query:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR
        V SN P  G+  F    GN+  +P +YSQG+D+S DD+  +R   +SEGR GSSGSKRKR
Subjt:  VLSNVP-RGFKGFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G24960.1 unknown protein

1.4e-04

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Query:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFG
        ++K R  N+ K +  +   C      F W+   + +I +  L+  ++K+HP A+ +  KP L++ ++C ++G
Subjt:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFG

AT2G24960.2 unknown protein

2.0e-06

22.89

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Query:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEI
        ++K R K++++ +  I  +     + FSW+   + +I +  +++ ++++HP A+ +  K    Y N+C++FGK+ +    T +
Subjt:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEI

AT4G02210.1 unknown protein

1.7e-05

23.61

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Query:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFG
        ++K R K++++ F AI  +       F+W++E + +  +  ++ +++K+H  A+ F+ +P  +Y ++C + G
Subjt:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFG

AT4G02210.2 unknown protein

1.7e-05

23.61

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Query:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFG
        ++K R K++++ F AI  +       F+W++E + +  +  ++ +++K+H  A+ F+ +P  +Y ++C + G
Subjt:  IIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFG

Sequences

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CDS sequence

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ATGGCGGAGAAGATGCCTAGATGTAACATCCAGGGTTCGCCGATAATAAAATGTCGGATAAAAAACATGAAGAAAACATTTCAGGCCATTGCAAAAATGTGCGGGCCTTC
GTGTAGTTGGTTCAGCTGGAACGATGAAGTGGAGTACATCATCACTGAGAAGAAGTTGTTCGACAATTGGGTGAAAAGTCATCCTGCTGCCAAGGGCTTCCTAAACAAGC
CATTTCTCCATTACGATAACATGTGCTATGTATTTGGGAAAGATCGTGCGACGAGAGCTCGCACGGAGATATTCACCGATGTACTGTCGAATGTGCCTAGAGGGTTCAAG
GGATTTCCCGCTGATTATGGAAACGATACGGAGATCCCTATGATGTACAGTCAGGGACTGGACATGTCACCTGATGACATCGCGGGCACACGACTCGGTCACTCGAGTGA
GGGTAGGATTGGTTCAAGTGGATCGAAGAGGAAGCGGAGACGCTAG

mRNA sequence

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Protein sequence

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MAEKMPRCNIQGSPIIKCRIKNMKKTFQAIAKMCGPSCSWFSWNDEVEYIITEKKLFDNWVKSHPAAKGFLNKPFLHYDNMCYVFGKDRATRARTEIFTDVLSNVPRGFK
GFPADYGNDTEIPMMYSQGLDMSPDDIAGTRLGHSSEGRIGSSGSKRKRRR

PI0011563 (gene) of Melon (PI 482460) v1 genome