; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011573 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011573
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr05:9614209..9615786
RNA-Seq ExpressionPI0011573
SyntenyPI0011573
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-2871.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GW+ NPNLRWGN+NQ+ TQA STS+NQG+NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.9e-2769.23Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GW+ NPNLRWGN+NQ+ TQA  TS+NQG+NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.3e-2767.95Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN+ W+ NPNLRWGN+NQ+ TQA STS+NQG+NL+D+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-2769.23Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GW+ NPNLRWGN+NQ+  QA  TS+NQG NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.9e-2769.23Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GW+ NPNLRWGN+NQ+ TQA  TS+NQG+NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919109.1e-2869.23Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GW+ NPNLRWGN+NQ+ TQA  TS+NQG+NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
A0A5A7V1C6 Retrotransposon gag protein4.5e-2767.95Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDPHGNTYN+ W+ NPNLRWGN+NQ+ TQA STS+NQG+NL+D+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
A0A5D3CRR8 Retrotransposon gag protein8.2e-2971.79Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GW+ NPNLRWGN+NQ+ TQA STS+NQG+NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
A0A5D3D815 Retrotransposon gag protein3.5e-2769.23Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GW+ NPNLRWGN+NQ+  QA  TS+NQG NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
A0A5D3DCG3 Retrotransposon gag protein9.1e-2869.23Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GW+ NPNLRWGN+NQ+ TQA  TS+NQG+NLED+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGAGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGCGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAAAGGCAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCACACAAGCAACTT
CTACTTCAAATAATCAAGGTTCAAATTTAGAGGACTTGGCGGCGAAGAAATATAGAGATATAATCTCATCGCCGAACTTATCCTTAGCATATGAATCAGAAATGATGAAA
TGTGTGGCGGAGACACCGAGAGGTTGCTCGCCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGAGAGCGACGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGCGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAAAGGCAATCCAAACCTTAGATGGGGAAATAATAATCAACAACCCACACAAGCAACTT
CTACTTCAAATAATCAAGGTTCAAATTTAGAGGACTTGGCGGCGAAGAAATATAGAGATATAATCTCATCGCCGAACTTATCCTTAGCATATGAATCAGAAATGATGAAA
TGTGTGGCGGAGACACCGAGAGGTTGCTCGCCTTAA
Protein sequenceShow/hide protein sequence
MAPLPESDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWKGNPNLRWGNNNQQPTQATSTSNNQGSNLEDLAAKKYRDIISSPNLSLAYESEMMK
CVAETPRGCSP