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PI0011581 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011581
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr12:17400952..17401450
RNA-Seq ExpressionPI0011581
SyntenyPI0011581
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032344.1 uncharacterized protein E6C27_scaffold219G002060 [Cucumis melo var. makuwa]4.9e-3253.85Show/hide
Query:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ K     +R+I VL+           + L  S             FEEKRLGI  +KHSDV LA T  P GA   FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAAT
        L G K+I+CPKI+CRYCHK GHIL+N P +PPRP  Y+T+++NFTK    SV AAT
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAAT

KAA0046400.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-3252.47Show/hide
Query:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ       +R+I VL+           + L  S             FEE+RLGI  +KHSDV LA T  P GA I FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP
        L G K+I CPKI+CRYCHK GHILDN P +PPRP  Y+TK++NFTK +  S A A  + T P
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP

KAA0063009.1 Integrase, catalytic core [Cucumis melo var. makuwa]1.7e-3253.37Show/hide
Query:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ K     +R+I VL+           + L  S             FEEKRLGI  +KHSDV LA T  P GA   FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPPP
        L G K+I+CPKI+CRYCHK GHILDN P +PPRP  Y+T+++NFTKS   SV AAT  +   P
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPPP

TYK14661.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.3e-3252.47Show/hide
Query:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ       +R+I VL+           + L  S             FEE+RLGI  +KHSDV LA T  P GA I FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP
        L G K+I CPKI+CRYCHK GHILDN P +PPRP  Y+TK++NFTK +  S A A  + T P
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP

XP_031742870.1 uncharacterized protein LOC116404496 [Cucumis sativus]1.2e-3355.56Show/hide
Query:  SVNEYLAALSPIWTQLDQLK----SVRIICVLLS-CLGNS-----------------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCKL
        SVNEYLAAL  IWT LDQ K     +R+I VL+  CL                          FEEKRLGI P KHSDV LA T P + A I F KNCKL
Subjt:  SVNEYLAALSPIWTQLDQLK----SVRIICVLLS-CLGNS-----------------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCKL

Query:  YGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPPP
         G K+I+CPKI+CRYCHK GHILDN PTRPPRPPG  TK +NFTK  T SV AATS ++  P
Subjt:  YGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPPP

TrEMBL top hitse value%identityAlignment
A0A1S3B566 uncharacterized protein LOC1034859232.4e-3253.85Show/hide
Query:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ K     +R+I VL+           + L  S             FEEKRLGI  +KHSDV LA T  P GA   FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAAT
        L G K+I+CPKI+CRYCHK GHIL+N P +PPRP  Y+T+++NFTK    SV AAT
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAAT

A0A5A7SMD6 Uncharacterized protein2.4e-3253.85Show/hide
Query:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ K     +R+I VL+           + L  S             FEEKRLGI  +KHSDV LA T  P GA   FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAAT
        L G K+I+CPKI+CRYCHK GHIL+N P +PPRP  Y+T+++NFTK    SV AAT
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAAT

A0A5A7TTD2 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-3352.47Show/hide
Query:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ       +R+I VL+           + L  S             FEE+RLGI  +KHSDV LA T  P GA I FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP
        L G K+I CPKI+CRYCHK GHILDN P +PPRP  Y+TK++NFTK +  S A A  + T P
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP

A0A5A7VBM6 Integrase, catalytic core8.2e-3353.37Show/hide
Query:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ K     +R+I VL+           + L  S             FEEKRLGI  +KHSDV LA T  P GA   FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQLK----SVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPPP
        L G K+I+CPKI+CRYCHK GHILDN P +PPRP  Y+T+++NFTKS   SV AAT  +   P
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPPP

A0A5D3CS71 Retrovirus-related Pol polyprotein from transposon TNT 1-946.3e-3352.47Show/hide
Query:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK
        QSVNEYLA L PIWTQLDQ       +R+I VL+           + L  S             FEE+RLGI  +KHSDV LA T  P GA I FCKNCK
Subjt:  QSVNEYLAALSPIWTQLDQL----KSVRIICVLL-----------SCLGNS-------------FEEKRLGITPTKHSDVALARTLPPHGA-IPFCKNCK

Query:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP
        L G K+I CPKI+CRYCHK GHILDN P +PPRP  Y+TK++NFTK +  S A A  + T P
Subjt:  LYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGYTTKSRNFTKSDTPSVAAATSSDTPP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCAGTCTGTTAATGAATATTTAGCAGCTCTTTCGCCTATCTGGACCCAGCTAGATCAACTAAAATCAGTGCGGATCATCTGCGTCTTATTAAGCTGTTTAGGAAA
TTCTTTTGAGGAAAAACGACTTGGTATCACTCCTACCAAACACTCTGATGTAGCTCTCGCCAGAACTCTTCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGC
TTTATGGCCAGAAATATATAGAGTGCCCTAAAATAAAGTGCAGGTACTGTCACAAATGTGGTCACATTCTGGATAATTACCCCACTCGTCCACCTCGACCACCAGGTTAC
ACTACAAAATCAAGAAATTTTACCAAGTCTGATACTCCTTCTGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCCCAATCTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATCAGTCTGTTAATGAATATTTAGCAGCTCTTTCGCCTATCTGGACCCAGCTAGATCAACTAAAATCAGTGCGGATCATCTGCGTCTTATTAAGCTGTTTAGGAAA
TTCTTTTGAGGAAAAACGACTTGGTATCACTCCTACCAAACACTCTGATGTAGCTCTCGCCAGAACTCTTCCACCTCATGGAGCAATACCGTTTTGTAAAAATTGTAAGC
TTTATGGCCAGAAATATATAGAGTGCCCTAAAATAAAGTGCAGGTACTGTCACAAATGTGGTCACATTCTGGATAATTACCCCACTCGTCCACCTCGACCACCAGGTTAC
ACTACAAAATCAAGAAATTTTACCAAGTCTGATACTCCTTCTGTTGCTGCCGCTACCTCCTCAGATACTCCTCCTCCCAATCTCTAG
Protein sequenceShow/hide protein sequence
MDQSVNEYLAALSPIWTQLDQLKSVRIICVLLSCLGNSFEEKRLGITPTKHSDVALARTLPPHGAIPFCKNCKLYGQKYIECPKIKCRYCHKCGHILDNYPTRPPRPPGY
TTKSRNFTKSDTPSVAAATSSDTPPPNL