; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011658 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011658
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:13059330..13061449
RNA-Seq ExpressionPI0011658
SyntenyPI0011658
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.6e-5670.18Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +D+DF QP+R +TLAEFLPR+FL+DH EE+LEV ACH  SIVEV+NN+  +EEV+NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSS  QRLSMATKEEENQCPTST  +TSAFKRL ISTSKK RPSTSAFD LKMT++Q +REMK+LK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

KAA0052018.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.6e-5670.18Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +D+DF QP++ +TLAEFLPR+FL+DH EE+LEV ACH  SIVEVDNN+  +EE++NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATK+EENQCPTST  +TSAFKRL ISTSKK RPSTSAFD LKMT++Q +REMKTLK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-5569.01Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +D+DF QP+R +TLAEFLPR+FL+DH EE+LEV ACH  SIVEVDNN+  +EE++NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATK+EEN+CPTST  +TSAFKRL ISTSKK RPST  FD LKMT++Q +REMKTLK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.7e-0764.15Show/hide
Query:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMMADVTTEATMVEMES
        +ESPKG IIIR NPLF+NSTPAS+LS+KES LEVVSVMM D    A   ++++
Subjt:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMMADVTTEATMVEMES

KAA0056218.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-5469.59Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +++DF QP+R +TLAEFL R+FL+DH EEVLEV ACH  SIVEVDNN+  +EEV+NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATKEE+NQCPTST  +TSAFKRL ISTSKK RPSTS FD LKMT++Q +REMK+LK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

KAA0066532.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.3e-5569.01Show/hide
Query:  HIEGSTTHKNKG--RKKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KG   KK WKPK ++ +D+DF QP++ +TL EFL R+FL+DH EEVLEV ACH  SI+EVDNN+  +EEV+NS EIKQR S+FDHIKP T
Subjt:  HIEGSTTHKNKG--RKKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATKEEENQCPTST  +TSAFKRL ISTSKK RPSTSAFD LKMT++Q +REMK+LK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

TYK08944.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-0579.49Show/hide
Query:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMM
        +ESPK  IIIR NPLF+NSTPAS+LS+KES LEVVSVMM
Subjt:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMM

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein4.2e-5670.18Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +D+DF QP+R +TLAEFLPR+FL+DH EE+LEV ACH  SIVEV+NN+  +EEV+NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSS  QRLSMATKEEENQCPTST  +TSAFKRL ISTSKK RPSTSAFD LKMT++Q +REMK+LK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

A0A5A7U9V3 Retrotransposon gag protein3.2e-5670.18Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +D+DF QP++ +TLAEFLPR+FL+DH EE+LEV ACH  SIVEVDNN+  +EE++NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATK+EENQCPTST  +TSAFKRL ISTSKK RPSTSAFD LKMT++Q +REMKTLK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

A0A5A7UM99 Ty3-gypsy retrotransposon protein4.6e-5569.01Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +D+DF QP+R +TLAEFLPR+FL+DH EE+LEV ACH  SIVEVDNN+  +EE++NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATK+EEN+CPTST  +TSAFKRL ISTSKK RPST  FD LKMT++Q +REMKTLK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

A0A5A7UM99 Ty3-gypsy retrotransposon protein4.7e-0764.15Show/hide
Query:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMMADVTTEATMVEMES
        +ESPKG IIIR NPLF+NSTPAS+LS+KES LEVVSVMM D    A   ++++
Subjt:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMMADVTTEATMVEMES

A0A5A7UM99 Ty3-gypsy retrotransposon protein6.0e-5569.59Show/hide
Query:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KGR  KK WKPK ++ +++DF QP+R +TLAEFL R+FL+DH EEVLEV ACH  SIVEVDNN+  +EEV+NS EIKQR SVFD IKP T
Subjt:  HIEGSTTHKNKGR--KKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATKEE+NQCPTST  +TSAFKRL ISTSKK RPSTS FD LKMT++Q +REMK+LK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

A0A5D3CCI8 Retrotransposon gag protein1.5e-0579.49Show/hide
Query:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMM
        +ESPK  IIIR NPLF+NSTPAS+LS+KES LEVVSVMM
Subjt:  MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMM

A0A5D3DQU7 Retrotransposon gag protein3.5e-5569.01Show/hide
Query:  HIEGSTTHKNKG--RKKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST
        H +G+ +HK KG   KK WKPK ++ +D+DF QP++ +TL EFL R+FL+DH EEVLEV ACH  SI+EVDNN+  +EEV+NS EIKQR S+FDHIKP T
Subjt:  HIEGSTTHKNKG--RKKTWKPKRMQKEDDDFDQPQRPVTLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPST

Query:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF
         RSSV QRLSMATKEEENQCPTST  +TSAFKRL ISTSKK RPSTSAFD LKMT++Q +REMK+LK KPF
Subjt:  ARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSAFDHLKMTSNQHEREMKTLKEKPF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCCTAAAGGCGAGATCATCATCAGAAAGAATCCTTTGTTCGACAACTCTACTCCTGCTTCTGATCTATCAGAAAAAGAATCACAACTTGAAGTAGTGTCTGT
CATGATGGCAGATGTAACAACTGAGGCAACCATGGTAGAGATGGAGAGTAAAATAAATTTCCTAATGAAAGTTTTCGAGGAGCAAGATCATGAAATCGCTGCCTTGAAAG
ATCATATAGAGGGAAGCACGACTCACAAAAATAAAGGAAGAAAGAAGACATGGAAGCCTAAGCGCATGCAGAAGGAAGACGATGACTTTGACCAACCTCAACGACCAGTA
ACTTTGGCAGAATTCCTCCCAAGAAACTTCCTTGATGATCATCTAGAGGAAGTATTAGAAGTCATTGCATGTCATGCTGTCAGCATAGTAGAAGTCGACAACAATCATGC
ATGTTTCGAAGAAGTCAACAATTCAAAGGAAATCAAGCAAAGGATTTCTGTCTTCGATCATATCAAGCCTTCAACTGCTCGATCTTCAGTCATTCAAAGGTTGAGTATGG
CCACGAAAGAAGAAGAAAATCAATGTCCAACGTCTACTTCCCCTCAAACTTCAGCTTTCAAAAGGCTAAGAATCTCCACATCAAAGAAAGATCGACCTTCAACATCTGCT
TTTGATCATCTAAAGATGACAAGCAATCAACATGAAAGAGAGATGAAAACTTTGAAGGAAAAACCATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTCCTAAAGGCGAGATCATCATCAGAAAGAATCCTTTGTTCGACAACTCTACTCCTGCTTCTGATCTATCAGAAAAAGAATCACAACTTGAAGTAGTGTCTGT
CATGATGGCAGATGTAACAACTGAGGCAACCATGGTAGAGATGGAGAGTAAAATAAATTTCCTAATGAAAGTTTTCGAGGAGCAAGATCATGAAATCGCTGCCTTGAAAG
ATCATATAGAGGGAAGCACGACTCACAAAAATAAAGGAAGAAAGAAGACATGGAAGCCTAAGCGCATGCAGAAGGAAGACGATGACTTTGACCAACCTCAACGACCAGTA
ACTTTGGCAGAATTCCTCCCAAGAAACTTCCTTGATGATCATCTAGAGGAAGTATTAGAAGTCATTGCATGTCATGCTGTCAGCATAGTAGAAGTCGACAACAATCATGC
ATGTTTCGAAGAAGTCAACAATTCAAAGGAAATCAAGCAAAGGATTTCTGTCTTCGATCATATCAAGCCTTCAACTGCTCGATCTTCAGTCATTCAAAGGTTGAGTATGG
CCACGAAAGAAGAAGAAAATCAATGTCCAACGTCTACTTCCCCTCAAACTTCAGCTTTCAAAAGGCTAAGAATCTCCACATCAAAGAAAGATCGACCTTCAACATCTGCT
TTTGATCATCTAAAGATGACAAGCAATCAACATGAAAGAGAGATGAAAACTTTGAAGGAAAAACCATTTTAA
Protein sequenceShow/hide protein sequence
MESPKGEIIIRKNPLFDNSTPASDLSEKESQLEVVSVMMADVTTEATMVEMESKINFLMKVFEEQDHEIAALKDHIEGSTTHKNKGRKKTWKPKRMQKEDDDFDQPQRPV
TLAEFLPRNFLDDHLEEVLEVIACHAVSIVEVDNNHACFEEVNNSKEIKQRISVFDHIKPSTARSSVIQRLSMATKEEENQCPTSTSPQTSAFKRLRISTSKKDRPSTSA
FDHLKMTSNQHEREMKTLKEKPF