; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0011743 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011743
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:5316815..5318454
RNA-Seq ExpressionPI0011743
SyntenyPI0011743
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-7462.96Show/hide
Query:  DRNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANV
        DRNTVDA AG ALADK PTEAR+LIS+MAENSQ+F NRASELDNSL KEVS                     +KV KCGVCGLV HPNDKCP ++E+ N+
Subjt:  DRNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANV

Query:  IRKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGK
        +RKYDPH NTYN+ WR++PNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQ M+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK
Subjt:  IRKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGK

Query:  TLET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         L+T  + E+K TS P+ L  K+E KEEK+ET+  P +SK  +
Subjt:  TLET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.3e-7664.05Show/hide
Query:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS--------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI
        NTVDA  GRALADKTPTEAR+LISRMA+N Q+FGNRASE DNSL KEVS                      +KV KCGVCGLV H N+KCP ++E+ N++
Subjt:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS--------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI

Query:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT
        R+YDPHSNTYN+ WR++PNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQ M+ LT AISK++GKGKLPAQ DHANVSAISLRSGK 
Subjt:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT

Query:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        L+T  + E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.8e-7462.92Show/hide
Query:  RNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI
        RNT+D  AG ALADKTPTEAR+LISRMAENS++FGNRASELDNSL KEVS                      KV KCGVCGLV HPNDKCP ++E+ N++
Subjt:  RNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI

Query:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT
        R+YDPHSNTYN+ WR++ NLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ +MKQ M+ LT AISK++GKGKLPAQPDHANVSAISLRSGK 
Subjt:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT

Query:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKG
        L+T  + E+K+TS P+ L +K+E KEEK+++    ++  G
Subjt:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKG

TYK14267.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.0e-7463.07Show/hide
Query:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR
        NTVDA AG ALADKTPT AR+LISRMAENSQ+FGN+ASELDNSLIKEVS                     +KV KCGVCGLV H NDKCP ++E+ N++R
Subjt:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR

Query:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL
        +YDPH NTYN+ WR++PNLRWGNDNQ+ + A S+S+ QGTNLED++KAL TNT+SFQ EMKQ M+ LT   SK++GKGKL AQP HANVS ISLRSGK L
Subjt:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL

Query:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        +T  S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

XP_008465471.1 PREDICTED: uncharacterized protein LOC103503078, partial [Cucumis melo]5.0e-7463.07Show/hide
Query:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR
        NTVDA AG ALADKTPT AR+LISRMAENSQ+FGN+ASELDNSLIKEVS                     +KV KCGVCGLV H NDKCP ++E+ N++R
Subjt:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR

Query:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL
        +YDPH NTYN+ WR++PNLRWGNDNQ+ + A S+S+ QGTNLED++KAL TNT+SFQ EMKQ M+ LT   SK++GKGKL AQP HANVS ISLRSGK L
Subjt:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL

Query:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        +T  S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

TrEMBL top hitse value%identityAlignment
A0A1S3CQF6 uncharacterized protein LOC1035030782.4e-7463.07Show/hide
Query:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR
        NTVDA AG ALADKTPT AR+LISRMAENSQ+FGN+ASELDNSLIKEVS                     +KV KCGVCGLV H NDKCP ++E+ N++R
Subjt:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR

Query:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL
        +YDPH NTYN+ WR++PNLRWGNDNQ+ + A S+S+ QGTNLED++KAL TNT+SFQ EMKQ M+ LT   SK++GKGKL AQP HANVS ISLRSGK L
Subjt:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL

Query:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        +T  S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

A0A5A7VQ60 Retrotransposon gag protein2.6e-7664.05Show/hide
Query:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS--------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI
        NTVDA  GRALADKTPTEAR+LISRMA+N Q+FGNRASE DNSL KEVS                      +KV KCGVCGLV H N+KCP ++E+ N++
Subjt:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS--------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI

Query:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT
        R+YDPHSNTYN+ WR++PNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQ M+ LT AISK++GKGKLPAQ DHANVSAISLRSGK 
Subjt:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT

Query:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        L+T  + E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

A0A5D3CB46 Retrotransposon gag protein1.8e-7462.92Show/hide
Query:  RNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI
        RNT+D  AG ALADKTPTEAR+LISRMAENS++FGNRASELDNSL KEVS                      KV KCGVCGLV HPNDKCP ++E+ N++
Subjt:  RNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVI

Query:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT
        R+YDPHSNTYN+ WR++ NLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ +MKQ M+ LT AISK++GKGKLPAQPDHANVSAISLRSGK 
Subjt:  RKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKT

Query:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKG
        L+T  + E+K+TS P+ L +K+E KEEK+++    ++  G
Subjt:  LET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKG

A0A5D3CQR9 Retrotransposon gag protein2.4e-7463.07Show/hide
Query:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR
        NTVDA AG ALADKTPT AR+LISRMAENSQ+FGN+ASELDNSLIKEVS                     +KV KCGVCGLV H NDKCP ++E+ N++R
Subjt:  NTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANVIR

Query:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL
        +YDPH NTYN+ WR++PNLRWGNDNQ+ + A S+S+ QGTNLED++KAL TNT+SFQ EMKQ M+ LT   SK++GKGKL AQP HANVS ISLRSGK L
Subjt:  KYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTL

Query:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
        +T  S E+KVTS P+ L +K+E KEEK+ET+  PS+SK  +
Subjt:  ET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

A0A5D3CRR8 Retrotransposon gag protein6.3e-7562.96Show/hide
Query:  DRNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANV
        DRNTVDA AG ALADK PTEAR+LIS+MAENSQ+F NRASELDNSL KEVS                     +KV KCGVCGLV HPNDKCP ++E+ N+
Subjt:  DRNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVS-------------------GSVKVAKCGVCGLVRHPNDKCPNLVEEANV

Query:  IRKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGK
        +RKYDPH NTYN+ WR++PNLRWGNDNQ+ +QA S+S+NQGTNLED++KAL TNT+SFQ EMKQ M+ LT AISK++GKGKL AQ ++ANVSA+SLRSGK
Subjt:  IRKYDPHSNTYNASWREDPNLRWGNDNQRPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGK

Query:  TLET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR
         L+T  + E+K TS P+ L  K+E KEEK+ET+  P +SK  +
Subjt:  TLET-LSSEEKVTSTPILLENKDEKKEEKLETSSLPSSSKGTR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGAAATACAGTAGACGCTACAGCAGGTCGTGCCTTGGCTGACAAAACCCCTACTGAGGCTAGACAGCTCATTTCGAGGATGGCTGAAAATTCACAGAATTTTGG
GAATAGAGCATCCGAGCTCGACAATTCATTGATTAAGGAGGTAAGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCAGGCATCCTAATGACAAGTGTC
CTAACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAACACTTACAATGCTAGTTGGAGAGAGGACCCTAATCTAAGATGGGGAAACGACAACCAA
AGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGGTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACA
TATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGACTC
TGGAAACCCTTTCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTTCTTCG
AAAGGAACAAGGGATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGAAATACAGTAGACGCTACAGCAGGTCGTGCCTTGGCTGACAAAACCCCTACTGAGGCTAGACAGCTCATTTCGAGGATGGCTGAAAATTCACAGAATTTTGG
GAATAGAGCATCCGAGCTCGACAATTCATTGATTAAGGAGGTAAGTGGATCCGTTAAAGTTGCAAAGTGTGGGGTGTGCGGTCTAGTCAGGCATCCTAATGACAAGTGTC
CTAACTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAACACTTACAATGCTAGTTGGAGAGAGGACCCTAATCTAAGATGGGGAAACGACAACCAA
AGACCCTCGCAAGCAACCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGGTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACA
TATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCGGCTCAGCCTGATCATGCCAACGTAAGTGCCATCTCACTTAGAAGCGGTAAGACTC
TGGAAACCCTTTCAAGTGAAGAAAAGGTAACTTCTACCCCTATCCTTCTAGAAAATAAAGATGAGAAAAAGGAAGAAAAATTAGAAACTAGTTCTTTACCATCTTCTTCG
AAAGGAACAAGGGATTGA
Protein sequenceShow/hide protein sequence
MDRNTVDATAGRALADKTPTEARQLISRMAENSQNFGNRASELDNSLIKEVSGSVKVAKCGVCGLVRHPNDKCPNLVEEANVIRKYDPHSNTYNASWREDPNLRWGNDNQ
RPSQATSSSNNQGTNLEDLVKALGTNTISFQNEMKQHMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKTLETLSSEEKVTSTPILLENKDEKKEEKLETSSLPSSS
KGTRD