CuGenDBv2

Gene ID	PI0011770
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Mediator of RNA polymerase II transcription subunit 28
Genome location	chr07:525495..531085
RNA-Seq Expression	PI0011770
Synteny	PI0011770
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

9.7e-68

97.87

Show/hide

Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKVKN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

1.1e-66

97.87

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKVKNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

1.7e-64

93.62

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP+DQQH LDPQLQS QSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

9.1e-66

94.33

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

8.2e-67

97.16

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQH LDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

4.7e-68

97.87

Show/hide

Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP+DQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKVKN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

5.2e-67

97.87

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKVKNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

5.2e-67

97.87

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ LDQQHSLDPQ QSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKVKNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

4.4e-66

94.33

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Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

4.4e-66

94.33

Show/hide

Query:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPLDQQ+ +DPQLQSSQSPREDM++YVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+K+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

2.2e-38

62.96

Show/hide

Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        K K+++IKK  RL +  +K +K+Q++KH +ELEKV
Subjt:  KVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.6e-39

62.96

Show/hide

Query:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL
        P ++S ++P        ED++A V ALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEEL
Subjt:  PQLQSSQSPR-------EDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEEL

Query:  KVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        K K+++IKK  RL +  +K +K+Q++KH +ELEKV
Subjt:  KVKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAACCACTCGACCAACAACATTCACTTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTAATGGCCTTGGAAGCTGC
TCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAGGCAATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTA
AAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGAGGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAAT
GACATAATCAAGAAACAGGAGAGGCTCATTGAAGGGTGGAAGAAGGATTTGAAAGACCAGTTGGACAAACATAACAATGAGTTAGAGAAAGTTTAA

mRNA sequence

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GAAAATAATAACAATAAAATTGGAGAAAAAAAGAGCCGAGAAGTGAAGGAAGGCGTAGGTAGTAGACTAGCTCCATCTCCTCCTCCTCCTTTCCTTTGCGGCCGCCGTCC
GACCAATAGTCCTCGCGCATCAAACCGACGAGCTCTTGCTCCACCTTCGACGGCGGAGCGACCTGAACACTCAGTTCGAACAAGTTTCATAGCATCGTTTCTTCTCCATT
TGATACTCCAAGTTGTGCATCACGTTTTTCACGACTGGGTGTGTCTTGCAGCAACGTTTTTGGCTTGTGGGATATGGCTGAACGACAACCACTCGACCAACAACATTCAC
TTGATCCACAATTGCAATCATCACAGTCTCCAAGAGAAGATATGATTGCATATGTAATGGCCTTGGAAGCTGCTCTGCTTCCGTGCTTGCCTGCAAGAGAACTACAGGCA
ATAGACCGTTCTCCTCACCCTTCTCATCAAGTTGACGTGGAGAGACATGCTAGGGATTTCATGGAGGCAGCTAAAAAGCTTCAATTGTATTTCATTGGTTTACAGCGTGA
GGATCAACCAACCAAAGTGGAAACACTAAGAAAGGAGATATCTGCCATTGAGGAGGAATTAAAGGTAAAAAATGACATAATCAAGAAACAGGAGAGGCTCATTGAAGGGT
GGAAGAAGGATTTGAAAGACCAGTTGGACAAACATAACAATGAGTTAGAGAAAGTTTAATAGAATAGGTTTGTGATCCCATGCTCTATTGTTTTTTTGTTATTTGTAGAT
CTTGTTAATTACATACTTTCACTATGAATGTAGGTGGGCTTATTGATACATCTTGTTTAATTACATTCATTGTGCGGTTGTGCCTAATTTTCTTCTTAAATTGTCGAAAT
AGTAATGAATTTAATTTGGGTGGTGAGATTTCAAATATTTATGGATTTTGGATTAAAAACGTATTTTATCATCTTAAAAAGAGGATAAATATATGTTTAACCAATTTTGA
CTTGAAA

Protein sequence

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MAERQPLDQQHSLDPQLQSSQSPREDMIAYVMALEAALLPCLPARELQAIDRSPHPSHQVDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKVKN
DIIKKQERLIEGWKKDLKDQLDKHNNELEKV

PI0011770 (gene) of Melon (PI 482460) v1 genome