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PI0011841 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011841
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:7657171..7658802
RNA-Seq ExpressionPI0011841
SyntenyPI0011841
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]1.1e-3752.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPY NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKLP QPD+ANVS ISLRSGKIL+TP++ E+ VT     L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

KAA0031967.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-3854.82Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KC VCGLVGHPNDKCP+++EE N+++KYDPYSNTYN GWRDNP LRWGNDNQ+  QA ++S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTS
               +GKGKLP QP+HANVSVISLRSGKIL+TPS+ E+ VT  P  L  KNE KEEK ET+ S
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTS

KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKL  QPDHANVSVISLRS KIL+TP++ E+ VT  P  L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.1e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDP+SNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKLP Q DHANVS ISLRSGKIL+TP++ E+ VT  P  L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]3.6e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKL  QPDHANVSVISLRS KIL+TP++ E+ VT  P  L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.8e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKL  QPDHANVSVISLRS KIL+TP++ E+ VT  P  L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

A0A5A7SRF5 Retrotransposon gag protein1.8e-3854.82Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KC VCGLVGHPNDKCP+++EE N+++KYDPYSNTYN GWRDNP LRWGNDNQ+  QA ++S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTS
               +GKGKLP QP+HANVSVISLRSGKIL+TPS+ E+ VT  P  L  KNE KEEK ET+ S
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTS

A0A5A7VQ60 Retrotransposon gag protein3.9e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVCGLVGH N+KCP+++E+ N++R+YDP+SNTYN+GWRDNPNLRWGNDNQ+  QA S+S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKLP Q DHANVS ISLRSGKIL+TP++ E+ VT  P  L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

A0A5D3DCG3 Retrotransposon gag protein1.8e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVCGLVGHPNDKCP+++E+ N+++KYDP+ NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKL  QPDHANVSVISLRS KIL+TP++ E+ VT  P  L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

E5GBZ4 Retrotransposon gag protein5.1e-3852.63Show/hide
Query:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------
        G  +KV KCGVC LVGHPNDKCP+++E+ N++RKYDPY NTYN+GWRDNPNLRWGNDNQ+  QA  +S+NQ                             
Subjt:  GGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQ-----------------------------

Query:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK
               +GKGKLP QPD+ANVS ISLRSGKIL+TP++ E+ VT     L  KNE KEEK ET+ SP + K
Subjt:  -------EGKGKLPVQPDHANVSVISLRSGKILETPSS-EENVTYTPDLLEDKNEKKEEKSETSTSPFSLK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGCCGTTGTCGGGGAGCGACGGTGGATCTGTGAAAGTCGCTAAGTGCGGGGTGTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTTATAGTAACACATACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGATAACCAAAGACCCGCGCAAGCAACTT
CTTCTTCAAACAATCAAGAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGTCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGC
GAAGAAAATGTAACTTATACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATCAGAAACAAGTACTTCACCATTTTCATTAAAAGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGCCGTTGTCGGGGAGCGACGGTGGATCTGTGAAAGTCGCTAAGTGCGGGGTGTGCGGTCTAGTTGGACATCCTAATGACAAGTGTCCTGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTTATAGTAACACATACAACGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGATAACCAAAGACCCGCGCAAGCAACTT
CTTCTTCAAACAATCAAGAAGGTAAAGGCAAACTTCCGGTTCAGCCTGATCATGCCAACGTAAGTGTCATCTCGCTCAGAAGCGGTAAGATTCTGGAAACCCCTTCAAGC
GAAGAAAATGTAACTTATACCCCTGACCTTCTAGAAGATAAAAATGAGAAAAAGGAAGAAAAATCAGAAACAAGTACTTCACCATTTTCATTAAAAGGTTAG
Protein sequenceShow/hide protein sequence
MTPLSGSDGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPYSNTYNAGWRDNPNLRWGNDNQRPAQATSSSNNQEGKGKLPVQPDHANVSVISLRSGKILETPSS
EENVTYTPDLLEDKNEKKEEKSETSTSPFSLKG