CuGenDBv2

Gene ID	PI0011844
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Photosystem I assembly protein ycf3
Genome location	chr01:13071976..13073939
RNA-Seq Expression	PI0011844
Synteny	PI0011844
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0015979 - photosynthesis (biological process) GO:0018298 - protein-chromophore linkage (biological process) GO:0009507 - chloroplast (cellular component) GO:0009522 - photosystem I (cellular component) GO:0015935 - small ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016491 - oxidoreductase activity (molecular function) GO:0019843 - rRNA binding (molecular function) GO:0046872 - metal ion binding (molecular function) GO:0051539 - 4 iron, 4 sulfur cluster binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652973.1 hypothetical protein Csa_021105 [Cucumis sativus]

1.6e-18

94.23

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSG
        EETLKYGSKGRNLP YSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAI LT G
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSG

QHO42382.1 Photosystem I assembly protein [Arachis hypogaea]

2.4e-17

85.71

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

RYR38553.1 hypothetical protein Ahy_A09g043603 [Arachis hypogaea]

4.1e-17

87.27

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Query:  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Subjt:  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

RYR42514.1 hypothetical protein Ahy_A08g038983 [Arachis hypogaea]

2.4e-17

85.71

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

RYR79265.1 hypothetical protein Ahy_A01g004097 [Arachis hypogaea]

5.3e-17

76.92

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW-----KEKDDL
        +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G +     KE+D +
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW-----KEKDDL

TrEMBL top hits

e value

%identity

Alignment

A0A445BIP7 Uncharacterized protein

2.0e-17

87.27

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Query:  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Subjt:  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

A0A445BUX7 Uncharacterized protein

1.2e-17

85.71

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

A0A445C631 Uncharacterized protein

1.2e-17

85.71

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

A0A445EUW8 Photosystem I P700 chlorophyll a apoprotein A1

2.6e-17

76.92

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Query:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW-----KEKDDL
        +ETLKYGSKGRNL TYSDRGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G +     KE+D +
Subjt:  EETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW-----KEKDDL

A0A7N2N7U5 Uncharacterized protein

1.2e-17

71.64

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Query:  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK
        ETLKYGSKGRN P YSDRGEQAIRQG+SEIAEAWF+QAAEYWKQAITLT G + E  +   +   F+
Subjt:  ETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK

SwissProt top hits

e value

%identity

Alignment

A0A336 Photosystem I assembly protein Ycf3

7.7e-11

84.21

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAI+LT G + E
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

Q09MH7 Photosystem I assembly protein Ycf3

4.5e-11

86.11

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW
        RGEQA+RQGDSEIAEAWFNQAAEYWKQAI LT G +
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRW

Q49KZ7 Photosystem I assembly protein Ycf3

7.7e-11

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK
        RGEQAIRQGDSEIAEAWF+QAAEYWKQAI LT G + E  +   +   F+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK

Q4VZH4 Photosystem I assembly protein Ycf3

7.0e-12

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK
        RGEQAIRQGDSEIAEAWFNQAAEYWKQAI LT G + E  +   +   FK
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK

Q9M3M5 Photosystem I assembly protein Ycf3

4.5e-11

84.21

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE
        RGEQAIRQGDSEIAEAWF+QAAEYWKQA+TLT G + E
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKE

Arabidopsis top hits

e value

%identity

Alignment

ATCG00360.1 Tetratricopeptide repeat (TPR)-like superfamily protein

1.6e-11

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Query:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK
        RGEQAI+QGDSE+AEAWF QAAEYWKQAITLT G + E  +   +   F+
Subjt:  RGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFK

Sequences

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CDS sequence

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ATGGTAAAATTTTTAAAATATGGGACAACAAAAGAATTAACTGTTGAGCCGTATGAGGAAACTCTCAAGTATGGTTCTAAGGGAAGGAATTTACCTACCTATTCCGATCG
GGGAGAACAGGCCATTCGACAGGGAGATTCTGAAATTGCGGAGGCTTGGTTCAATCAAGCCGCTGAGTATTGGAAACAAGCTATAACGCTTACTTCCGGGCGTTGGAAGG
AGAAAGATGACCTCGAAGCCTTAGTGGAGGAGTTCAAGGAAGAGCTGGAGGCGATGAGTCCAATTGATCAAGGGATATCACCTAAGAAACAAAAGGAGGTCATCGGGCCA
TCTAAGACAAGGAAGAAAACGGGGACGTCCAGACCTGAGAAGCCCTAA

mRNA sequence

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Protein sequence

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MVKFLKYGTTKELTVEPYEETLKYGSKGRNLPTYSDRGEQAIRQGDSEIAEAWFNQAAEYWKQAITLTSGRWKEKDDLEALVEEFKEELEAMSPIDQGISPKKQKEVIGP
SKTRKKTGTSRPEKP

PI0011844 (gene) of Melon (PI 482460) v1 genome