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PI0011897 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011897
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:9337543..9338439
RNA-Seq ExpressionPI0011897
SyntenyPI0011897
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046247.1 uncharacterized protein E6C27_scaffold284G00450 [Cucumis melo var. makuwa]7.1e-2234.62Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE
        +ATKERRRLSYARVCVEL   S MP EIT                                                                     LE
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE

Query:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH
        EGEI  S N+ ++Q+E+ VG +D FT VTR++ ++VSVR RG+                                       ETR+REGNF  V  RF +
Subjt:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH

Query:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
        SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

KAA0049770.1 hypothetical protein E6C27_scaffold76G001230 [Cucumis melo var. makuwa]2.4e-1729.89Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE
        +A K+R RLSYARVC+EL   S MP EIT                                                                     LE
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE

Query:  EGEIHGSSNKPSTQLERDVGHA-DFTPVTRKRMKVVSVRARGE---------------------------------------------------------
        EG+I  S N+ ++Q+E+ VG + DFT VTRK+ ++VSVR RG+                                                         
Subjt:  EGEIHGSSNKPSTQLERDVGHA-DFTPVTRKRMKVVSVRARGE---------------------------------------------------------

Query:  ---------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
                 ETR+REGNF  V  RFG+SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  ---------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

KAA0060724.1 hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa]8.2e-1830.83Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT-----------------------------------------------------------------------
        +ATKERRRLSYARVCV+L  DS MP EIT                                                                       
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT-----------------------------------------------------------------------

Query:  ---LEEGEIHGSSNKPSTQLERDVG-HADFTPVTRKRMKVVSVRARGE----------------------------------------------------
           LEEGEI  S N+ S+Q+E++VG   DFT VTRK+ ++V VR RG+                                                    
Subjt:  ---LEEGEIHGSSNKPSTQLERDVG-HADFTPVTRKRMKVVSVRARGE----------------------------------------------------

Query:  --------------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
                      E+R RE NF  V  RFG+SW  SCSYS++GVGRIWVMWK+ RF F++R+VDE
Subjt:  --------------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

TYK18951.1 uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]7.1e-2234.62Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE
        +ATKERRRLSYARVCVEL   S MP EIT                                                                     LE
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE

Query:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH
        EGEI  S N+ ++Q+E+ VG +D FT VTR++ ++VSVR RG+                                       ETR+REGNF  V  RF +
Subjt:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH

Query:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
        SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]4.1e-1730.68Show/hide
Query:  ATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LEE
        ATK+RRRLSYARVCVEL   S M  EIT                                                                     +E+
Subjt:  ATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LEE

Query:  GEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------------------------E
        GEI  S N+  +Q+E+ VG +D FT VTRK+ ++VS+R RG+                                                         E
Subjt:  GEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------------------------E

Query:  TRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
        TR+REGNF  V  RF +SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  TRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

TrEMBL top hitse value%identityAlignment
A0A5A7SPE5 Reverse transcriptase domain-containing protein2.0e-1730.68Show/hide
Query:  ATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LEE
        ATK+RRRLSYARVCVEL   S M  EIT                                                                     +E+
Subjt:  ATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LEE

Query:  GEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------------------------E
        GEI  S N+  +Q+E+ VG +D FT VTRK+ ++VS+R RG+                                                         E
Subjt:  GEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------------------------E

Query:  TRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
        TR+REGNF  V  RF +SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  TRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

A0A5A7TWG5 Reverse transcriptase domain-containing protein3.5e-2234.62Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE
        +ATKERRRLSYARVCVEL   S MP EIT                                                                     LE
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE

Query:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH
        EGEI  S N+ ++Q+E+ VG +D FT VTR++ ++VSVR RG+                                       ETR+REGNF  V  RF +
Subjt:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH

Query:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
        SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

A0A5A7U3C2 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein1.2e-1729.89Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE
        +A K+R RLSYARVC+EL   S MP EIT                                                                     LE
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE

Query:  EGEIHGSSNKPSTQLERDVGHA-DFTPVTRKRMKVVSVRARGE---------------------------------------------------------
        EG+I  S N+ ++Q+E+ VG + DFT VTRK+ ++VSVR RG+                                                         
Subjt:  EGEIHGSSNKPSTQLERDVGHA-DFTPVTRKRMKVVSVRARGE---------------------------------------------------------

Query:  ---------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
                 ETR+REGNF  V  RFG+SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  ---------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

A0A5A7V084 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein4.0e-1830.83Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT-----------------------------------------------------------------------
        +ATKERRRLSYARVCV+L  DS MP EIT                                                                       
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT-----------------------------------------------------------------------

Query:  ---LEEGEIHGSSNKPSTQLERDVG-HADFTPVTRKRMKVVSVRARGE----------------------------------------------------
           LEEGEI  S N+ S+Q+E++VG   DFT VTRK+ ++V VR RG+                                                    
Subjt:  ---LEEGEIHGSSNKPSTQLERDVG-HADFTPVTRKRMKVVSVRARGE----------------------------------------------------

Query:  --------------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
                      E+R RE NF  V  RFG+SW  SCSYS++GVGRIWVMWK+ RF F++R+VDE
Subjt:  --------------ETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

A0A5D3D5X6 Reverse transcriptase domain-containing protein3.5e-2234.62Show/hide
Query:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE
        +ATKERRRLSYARVCVEL   S MP EIT                                                                     LE
Subjt:  MATKERRRLSYARVCVELFVDSIMPTEIT---------------------------------------------------------------------LE

Query:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH
        EGEI  S N+ ++Q+E+ VG +D FT VTR++ ++VSVR RG+                                       ETR+REGNF  V  RF +
Subjt:  EGEIHGSSNKPSTQLERDVGHAD-FTPVTRKRMKVVSVRARGE---------------------------------------ETRIREGNFGDVFGRFGH

Query:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE
        SW  SCSYS++GVGRIWVMWK+ RF F++ V+DE
Subjt:  SWGCSCSYSSNGVGRIWVMWKQGRFDFTSRVVDE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACAAAGGAACGTCGGAGATTGTCGTATGCACGTGTGTGTGTTGAGTTATTTGTGGATTCTATTATGCCTACTGAGATTACGTTAGAGGAGGGTGAAATTCATGG
CTCTTCGAATAAGCCCTCTACTCAGTTAGAGAGGGATGTGGGCCACGCTGACTTTACCCCTGTGACTCGTAAACGAATGAAGGTGGTTTCAGTTAGAGCTCGTGGTGAAG
AGACAAGAATTCGTGAGGGTAATTTTGGGGATGTGTTTGGTAGGTTTGGCCATTCTTGGGGTTGCTCCTGTAGTTATAGTAGCAACGGTGTTGGACGAATTTGGGTGATG
TGGAAACAAGGTCGTTTCGACTTTACTTCTAGAGTGGTGGATGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACAAAGGAACGTCGGAGATTGTCGTATGCACGTGTGTGTGTTGAGTTATTTGTGGATTCTATTATGCCTACTGAGATTACGTTAGAGGAGGGTGAAATTCATGG
CTCTTCGAATAAGCCCTCTACTCAGTTAGAGAGGGATGTGGGCCACGCTGACTTTACCCCTGTGACTCGTAAACGAATGAAGGTGGTTTCAGTTAGAGCTCGTGGTGAAG
AGACAAGAATTCGTGAGGGTAATTTTGGGGATGTGTTTGGTAGGTTTGGCCATTCTTGGGGTTGCTCCTGTAGTTATAGTAGCAACGGTGTTGGACGAATTTGGGTGATG
TGGAAACAAGGTCGTTTCGACTTTACTTCTAGAGTGGTGGATGAGTAG
Protein sequenceShow/hide protein sequence
MATKERRRLSYARVCVELFVDSIMPTEITLEEGEIHGSSNKPSTQLERDVGHADFTPVTRKRMKVVSVRARGEETRIREGNFGDVFGRFGHSWGCSCSYSSNGVGRIWVM
WKQGRFDFTSRVVDE