CuGenDBv2

Gene ID	PI0011904
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic
Genome location	chr01:24993521..24995882
RNA-Seq Expression	PI0011904
Synteny	PI0011904
Gene Ontology terms	GO:0009507 - chloroplast (cellular component)
InterPro domains	IPR003772 - Large ribosomal RNA subunit accumulation protein YceD

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0067976.1 uncharacterized protein E6C27_scaffold138G001640 [Cucumis melo var. makuwa]

4.4e-177

96.55

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY KSKGNVSFNSHFRVPWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEMGSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

TYK18147.1 uncharacterized protein E5676_scaffold411G00780 [Cucumis melo var. makuwa]

1.2e-174

95.61

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY KSKGNVSFNS  R PWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEMGSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

XP_004136166.1 large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic [Cucumis sativus]

3.4e-169

92.16

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHSNEFIN+FY KSKG VSF+SHFRVPWR +R  QPSLGDPCIKMKST++KCVKPTYQSLFEDN IITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSII
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISG+DMFKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVICDPGCKG+CLNCGINLNTGSC CSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

XP_008451550.1 PREDICTED: uncharacterized protein LOC103492797 isoform X1 [Cucumis melo]

6.4e-176

95.92

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY +SKGNVSFNSHFRVPWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

XP_008451552.1 PREDICTED: uncharacterized protein LOC103492797 isoform X2 [Cucumis melo]

6.4e-176

95.92

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY +SKGNVSFNSHFRVPWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KAY7 Uncharacterized protein

1.6e-169

92.16

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHSNEFIN+FY KSKG VSF+SHFRVPWR +R  QPSLGDPCIKMKST++KCVKPTYQSLFEDN IITDW DQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        +IYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRK+KKLRLDGIVKTVITLNCY CCEPAPECIFSNFSII
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISG+DMFKTDNGNSDEDDEE +DLDDQLYFPP++KEIDISKNIRDILHLEITMNVICDPGCKG+CLNCGINLNTGSC CSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLG+LKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

A0A1S3BR50 uncharacterized protein LOC103492797 isoform X2

3.1e-176

95.92

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY +SKGNVSFNSHFRVPWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

A0A1S3BSU8 uncharacterized protein LOC103492797 isoform X1

3.1e-176

95.92

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY +SKGNVSFNSHFRVPWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEM SPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

A0A5A7VN29 Uncharacterized protein

2.1e-177

96.55

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY KSKGNVSFNSHFRVPWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEMGSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

A0A5D3D2J4 Uncharacterized protein

5.8e-175

95.61

Show/hide

Query:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA
        MLATFPTSSVVSSSHS EFIN+FY KSKGNVSFNS  R PWRFMR  QPSLGDPCIKMKSTS+KCVKPTYQSLFEDN IITDWGDQEGDIEEMGSPWEGA
Subjt:  MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGA

Query:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII
        VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSI+
Subjt:  VIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSII

Query:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV
        LSEEPIEEPDVINMGIISGQD+FKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVIC+PGCKGMCLNCGINLNTGSCNCSKQ V
Subjt:  LSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTV

Query:  KKNDFGPLGNLKRRMQNNS
        KKNDFGPLGNLKRRMQNNS
Subjt:  KKNDFGPLGNLKRRMQNNS

SwissProt top hits

e value

%identity

Alignment

A0A1D6HQ92 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

5.8e-55

53.27

Show/hide

Query:  SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECI
        SPWEGAV+Y+R+++V H+EY +TLERLGL  LS+  S++RA+ +GL   T D       TPV +SVDVTR+  +LRLDGIV+TVITL C+RC EPAP+ I
Subjt:  SPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLR-VTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECI

Query:  FSNFSIILSEEPI-EEPDVINMGIISGQDMFKTDNGNSD----EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINL
        F+NFS++L+E+P+ EEPD   +G I  +D    D G +      D ++ +D DD+L+FP  DKEIDISK+IRD++HLEIT++ +C+P CKG+CL CG NL
Subjt:  FSNFSIILSEEPI-EEPDVINMGIISGQDMFKTDNGNSD----EDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINL

Query:  N-TGSCNCSKQTVK
        N T SC C  + V+
Subjt:  N-TGSCNCSKQTVK

Q9LT27 Large ribosomal RNA subunit accumulation protein YCED homolog 1, chloroplastic

1.6e-84

60.54

Show/hide

Query:  IKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   +   +  + +S  E + I  DW DQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C RC E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  +D +D+L+FPP  KEIDI
Subjt:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTVKKNDFGPLGNLKRRMQ
        SK+IRD++HLEIT+  ICD  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTVKKNDFGPLGNLKRRMQ

Arabidopsis top hits

e value

%identity

Alignment

AT3G19810.1 Protein of unknown function (DUF177)

1.1e-85

60.54

Show/hide

Query:  IKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV
        IK+   +   +  + +S  E + I  DW DQE +IE+ GSPWEG+V+Y+RN+SV+HVEYCTTLERLGL +LSTDVSK RAS MGLRVTKDVKDYP GTPV
Subjt:  IKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVSHVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPV

Query:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI
        Q+SVDV RK KKLRLDGIV+TVITL C RC E   E IFSNFS++L+EEP+EEPDVI++G   G D  K +  + D++D+  +D +D+L+FPP  KEIDI
Subjt:  QISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGQDMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDI

Query:  SKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTVKKNDFGPLGNLKRRMQ
        SK+IRD++HLEIT+  ICD  CKGMCL CG NLN   C+C ++  K   +GPLGNL+ +MQ
Subjt:  SKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTVKKNDFGPLGNLKRRMQ

Sequences

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CDS sequence

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ATGCTAGCCACATTTCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATATATTCTACTCCAAATCCAAAGGGAATGTTTCTTTTAATTCACATTT
TCGAGTTCCATGGAGATTTATGAGAAAATTTCAGCCAAGCTTGGGTGACCCATGTATTAAGATGAAATCTACTTCCGTAAAGTGTGTGAAACCTACGTATCAATCCCTTT
TTGAGGACAATCCGATTATTACTGATTGGGGAGATCAAGAAGGGGATATTGAGGAGATGGGCTCACCTTGGGAAGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCT
CATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAAATCTAGAGCATCGACGATGGGTCTACGCGTAACGAAGGATGTGAA
AGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAGATAAAAAGTTGAGGCTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATA
GGTGTTGTGAACCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCAATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGTGGGCAG
GATATGTTCAAGACTGATAATGGAAATAGTGATGAAGATGATGAAGAGTCGGTAGATTTGGATGATCAACTCTATTTTCCTCCTGTGGACAAAGAGATAGATATATCAAA
AAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGTGATATGTGATCCTGGATGCAAAGGTATGTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTA
ACTGTAGTAAGCAGACTGTAAAGAAGAATGATTTTGGTCCTCTTGGAAATTTGAAAAGACGAATGCAGAACAATTCCTAA

mRNA sequence

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AAATAACTGAAAAGTCCTTCCATGACTTAAGCCACTGGATAAAATTTTTCGGCGGAGCGTCATCGAAATTGCCACCATTTTCAAGAACTGAGGGACTGTGTTATTTGTAT
CTACGGAAATTCCCTTACCCAATTTCTATCCCCTATTCGTTTAAGATGCTAGCCACATTTCCCACATCATCCGTAGTTTCATCTTCTCATTCCAACGAATTTATTAATAT
ATTCTACTCCAAATCCAAAGGGAATGTTTCTTTTAATTCACATTTTCGAGTTCCATGGAGATTTATGAGAAAATTTCAGCCAAGCTTGGGTGACCCATGTATTAAGATGA
AATCTACTTCCGTAAAGTGTGTGAAACCTACGTATCAATCCCTTTTTGAGGACAATCCGATTATTACTGATTGGGGAGATCAAGAAGGGGATATTGAGGAGATGGGCTCA
CCTTGGGAAGGAGCAGTTATTTACAAGAGGAACTCTTCAGTTTCTCATGTGGAGTATTGCACAACATTAGAGAGGCTTGGGTTAGAGAAGCTTTCGACTGATGTCTCGAA
ATCTAGAGCATCGACGATGGGTCTACGCGTAACGAAGGATGTGAAAGATTATCCCTTTGGAACGCCTGTTCAAATCTCTGTTGATGTCACAAGGAAAGATAAAAAGTTGA
GGCTGGATGGAATAGTTAAAACTGTCATCACTCTGAATTGTTATAGGTGTTGTGAACCTGCTCCTGAATGCATTTTCTCAAATTTCTCCATTATACTAAGCGAAGAACCA
ATTGAAGAACCTGATGTCATAAATATGGGAATCATTAGTGGGCAGGATATGTTCAAGACTGATAATGGAAATAGTGATGAAGATGATGAAGAGTCGGTAGATTTGGATGA
TCAACTCTATTTTCCTCCTGTGGACAAAGAGATAGATATATCAAAAAACATCAGAGACATCTTGCATCTGGAAATTACTATGAATGTGATATGTGATCCTGGATGCAAAG
GTATGTGTCTAAATTGTGGTATAAATTTGAATACTGGAAGCTGTAACTGTAGTAAGCAGACTGTAAAGAAGAATGATTTTGGTCCTCTTGGAAATTTGAAAAGACGAATG
CAGAACAATTCCTAAGACTTGAATGCAAGACCATGTGTTCCTTTTAATCAAACCCTTTCTATCTAGAAAATGTGTCTTATCTTGGCTGAGATCTTTTACAAGTTTTCAAC
CATCTTTTTTATAATCTTATTCTATTTGCATTTTAACCTTTGTTAAGTTAGAGTACCTGCAATGAAATTCTGAGAGAATATGTCTATTATTA

Protein sequence

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MLATFPTSSVVSSSHSNEFINIFYSKSKGNVSFNSHFRVPWRFMRKFQPSLGDPCIKMKSTSVKCVKPTYQSLFEDNPIITDWGDQEGDIEEMGSPWEGAVIYKRNSSVS
HVEYCTTLERLGLEKLSTDVSKSRASTMGLRVTKDVKDYPFGTPVQISVDVTRKDKKLRLDGIVKTVITLNCYRCCEPAPECIFSNFSIILSEEPIEEPDVINMGIISGQ
DMFKTDNGNSDEDDEESVDLDDQLYFPPVDKEIDISKNIRDILHLEITMNVICDPGCKGMCLNCGINLNTGSCNCSKQTVKKNDFGPLGNLKRRMQNNS

PI0011904 (gene) of Melon (PI 482460) v1 genome