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PI0011960 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0011960
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr09:12328424..12329190
RNA-Seq ExpressionPI0011960
SyntenyPI0011960
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151643.1 uncharacterized protein LOC111019551 [Momordica charantia]2.8e-0950Show/hide
Query:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIK
        KLQAL+QG+KSV  YY+E+  L+  + I E +E TM  F NGLN E+     DR  +Q  ED++E+VH ++KIEKQ+QR  SR  K
Subjt:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIK

XP_022152309.1 uncharacterized protein LOC111020057 [Momordica charantia]9.6e-1046.67Show/hide
Query:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKL-NSNATTNKET
        KLQAL+QG+KSV  YY+E+  L+  I + E+ +  M  F N LNKEI     D+ ++Q   D+EEM+H AIKIE+Q+QR S RY   +  NS+AT  K++
Subjt:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKL-NSNATTNKET

Query:  LNNVV
         N+ V
Subjt:  LNNVV

XP_022158803.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025268 [Momordica charantia]1.6e-0945.63Show/hide
Query:  NEKGFHKLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNAT
        + K   KLQ L+QGSKSV  YY+E+  L+  + + E+ E  M  F NGLNKEI     D+ ++Q   ++EEM+H AIKIEKQLQR S RY     + +++
Subjt:  NEKGFHKLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNAT

Query:  TNK
        T K
Subjt:  TNK

XP_022159097.1 uncharacterized protein LOC111025539 [Momordica charantia]6.6e-1150Show/hide
Query:  KLQALKQGSKSVNTYYE--ELLLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTN
        KLQAL+QG+KSV  YY+  E L+  + I E EE TM  F NGLN E+      R ++Q  ED+EE+VH ++KIEKQ+QR  SRY   K  SN+T++
Subjt:  KLQALKQGSKSVNTYYE--ELLLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTN

XP_023518111.1 beta-galactosidase 15-like [Cucurbita pepo subsp. pepo]9.6e-1043.24Show/hide
Query:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTNKETL
        KLQ+LKQGSKSV  YY+E+  L+  + + E+ E  M  F NGLN EI     D+ ++Q   D+EE++H AIKIE+Q+QR S RY     +  ++T K+  
Subjt:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTNKETL

Query:  NNVVSMHDHNI
         N+    D+NI
Subjt:  NNVVSMHDHNI

TrEMBL top hitse value%identityAlignment
A0A6J1DCS9 uncharacterized protein LOC1110195511.3e-0950Show/hide
Query:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIK
        KLQAL+QG+KSV  YY+E+  L+  + I E +E TM  F NGLN E+     DR  +Q  ED++E+VH ++KIEKQ+QR  SR  K
Subjt:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIK

A0A6J1DFN2 uncharacterized protein LOC1110200574.6e-1046.67Show/hide
Query:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKL-NSNATTNKET
        KLQAL+QG+KSV  YY+E+  L+  I + E+ +  M  F N LNKEI     D+ ++Q   D+EEM+H AIKIE+Q+QR S RY   +  NS+AT  K++
Subjt:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKL-NSNATTNKET

Query:  LNNVV
         N+ V
Subjt:  LNNVV

A0A6J1DX46 LOW QUALITY PROTEIN: uncharacterized protein LOC1110252687.9e-1045.63Show/hide
Query:  NEKGFHKLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNAT
        + K   KLQ L+QGSKSV  YY+E+  L+  + + E+ E  M  F NGLNKEI     D+ ++Q   ++EEM+H AIKIEKQLQR S RY     + +++
Subjt:  NEKGFHKLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNAT

Query:  TNK
        T K
Subjt:  TNK

A0A6J1DYV9 uncharacterized protein LOC1110255393.2e-1150Show/hide
Query:  KLQALKQGSKSVNTYYE--ELLLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTN
        KLQAL+QG+KSV  YY+  E L+  + I E EE TM  F NGLN E+      R ++Q  ED+EE+VH ++KIEKQ+QR  SRY   K  SN+T++
Subjt:  KLQALKQGSKSVNTYYE--ELLLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTN

A0A6J1EVV9 uncharacterized protein LOC1114364633.0e-0940Show/hide
Query:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTNKETL
        KLQALKQG KSV  YY+E+  L+  + + E+ E  M  F NGLN EI     D+ ++Q   ++EE++H AIKIE+Q+QR S RY      ++ +T K+  
Subjt:  KLQALKQGSKSVNTYYEEL--LLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRGSSRYIKSKLNSNATTNKETL

Query:  NNVVSMHDHNILSSK
         N+   H +  ++ K
Subjt:  NNVVSMHDHNILSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGATGTATTTATTGTCAAAAAGGAGGAGAAGCGAAAATCATGCAAAACTCTCATGGAAAGAAATCAAGGCGCTAATGAGAAAGGTTTCCATAAATTGCAAGCTTT
GAAGCAAGGGAGCAAAAGTGTGAATACTTACTATGAAGAGTTGTTACTACTTGAGATTAGCATATATGAGGAAGAAGAAACTACCATGGATATATTCTACAATGGACTTA
ACAAGGAAATTTTCGATGTGCTTGTCGACCGAGAAGAAATTCAAACTTGTGAGGATTTGGAAGAAATGGTGCACGCTGCCATCAAGATAGAAAAGCAACTCCAAAGAGGA
TCTTCAAGGTACATTAAATCTAAGCTCAATTCCAATGCCACCACTAATAAAGAGACGCTTAATAATGTTGTGTCAATGCATGATCATAATATTTTGTCTAGTAAGTCATT
AGATTGCAAGGACTCTCATAATTGTAATCTTACTACTACAGTTGTACAACTTAATTCTGGAGAAGTATTTGTTAATGGTAGTGGGGAAGAGAAAGTAAATGGTTATGAAC
TTGATAGTGGTATACTTTGTGCTAACATTTCTAGTCCATTAAAGCATAGAGTAATATTTGATTATACTTTCGTATCATTGCCTCCAAAAGAAGAAAAACTTGTTGTATGT
GAGTTGGAAGACAAAAGGCATGAGATTGAGACAAAAACAATAGAAATATATGAAGAAGAAAATTGTGAAAACATTGGTGAGAGAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGATGTATTTATTGTCAAAAAGGAGGAGAAGCGAAAATCATGCAAAACTCTCATGGAAAGAAATCAAGGCGCTAATGAGAAAGGTTTCCATAAATTGCAAGCTTT
GAAGCAAGGGAGCAAAAGTGTGAATACTTACTATGAAGAGTTGTTACTACTTGAGATTAGCATATATGAGGAAGAAGAAACTACCATGGATATATTCTACAATGGACTTA
ACAAGGAAATTTTCGATGTGCTTGTCGACCGAGAAGAAATTCAAACTTGTGAGGATTTGGAAGAAATGGTGCACGCTGCCATCAAGATAGAAAAGCAACTCCAAAGAGGA
TCTTCAAGGTACATTAAATCTAAGCTCAATTCCAATGCCACCACTAATAAAGAGACGCTTAATAATGTTGTGTCAATGCATGATCATAATATTTTGTCTAGTAAGTCATT
AGATTGCAAGGACTCTCATAATTGTAATCTTACTACTACAGTTGTACAACTTAATTCTGGAGAAGTATTTGTTAATGGTAGTGGGGAAGAGAAAGTAAATGGTTATGAAC
TTGATAGTGGTATACTTTGTGCTAACATTTCTAGTCCATTAAAGCATAGAGTAATATTTGATTATACTTTCGTATCATTGCCTCCAAAAGAAGAAAAACTTGTTGTATGT
GAGTTGGAAGACAAAAGGCATGAGATTGAGACAAAAACAATAGAAATATATGAAGAAGAAAATTGTGAAAACATTGGTGAGAGAAAATAA
Protein sequenceShow/hide protein sequence
MVDVFIVKKEEKRKSCKTLMERNQGANEKGFHKLQALKQGSKSVNTYYEELLLLEISIYEEEETTMDIFYNGLNKEIFDVLVDREEIQTCEDLEEMVHAAIKIEKQLQRG
SSRYIKSKLNSNATTNKETLNNVVSMHDHNILSSKSLDCKDSHNCNLTTTVVQLNSGEVFVNGSGEEKVNGYELDSGILCANISSPLKHRVIFDYTFVSLPPKEEKLVVC
ELEDKRHEIETKTIEIYEEENCENIGERK