CuGenDBv2

Gene ID	PI0011998
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrotransposon protein
Genome location	chr12:13747820..13748366
RNA-Seq Expression	PI0011998
Synteny	PI0011998
Gene Ontology terms	GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR027806 - Harbinger transposase-derived nuclease domain

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]

8.1e-60

79.29

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNRVIQREF+RS ET+SR FNM LL V+RLH+ELLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRILRDA+ RPN L+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]

2.8e-60

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNRVIQREF+RS ET+SR FNM LL V+RLHDELLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRILRDA+ RPN L+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]

8.1e-60

79.29

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNRVIQREF+RS ET+SR FNM LL V+RLH+ELLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRILRDA+ RPN L+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

TYK02751.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]

1.1e-59

79.29

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH++ HDVKNRVIQREF+RS ET+SR FNM LL V+RLHD+LLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRIL DAI RPNGL+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

XP_008455792.1 PREDICTED: putative nuclease HARBI1 [Cucumis melo]

8.1e-60

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNR+IQREF+RS ETVSR FN+ LL   RLHDELLKKPQPVTN  TDPRW+WFENCLGALD TYIKVNV  +DRPRYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
         CDTKGD VFVL GWEGS ADSRILRDAI R NGL+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C1U8 putative nuclease HARBI1

3.9e-60

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNR+IQREF+RS ETVSR FN+ LL   RLHDELLKKPQPVTN  TDPRW+WFENCLGALD TYIKVNV  +DRPRYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
         CDTKGD VFVL GWEGS ADSRILRDAI R NGL+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

A0A5A7TXW1 Retrotransposon protein

1.4e-60

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNRVIQREF+RS ET+SR FNM LL V+RLHDELLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRILRDA+ RPN L+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

A0A5A7U9H2 Retrotransposon protein

3.9e-60

79.29

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNRVIQREF+RS ET+SR FNM LL V+RLH+ELLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRILRDA+ RPN L+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

A0A5D3BDX0 Retrotransposon protein

3.9e-60

79.29

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH+L HDVKNRVIQREF+RS ET+SR FNM LL V+RLH+ELLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT+KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRILRDA+ RPN L+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

A0A5D3BSN2 Putative nuclease HARBI1

5.1e-60

79.29

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG
        MFLH++ HDVKNRVIQREF+RS ET+SR FNM LL V+RLHD+LLKKPQPV N  TD RWRWFENCLGALD TYIKVNV  SDR RYRT KG++ATNVLG
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLG

Query:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG
        +CDTKGD V+VLAGWEGS ADSRIL DAI RPNGL+VPKG
Subjt:  ICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G28950.1 unknown protein

4.2e-14

41.77

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Query:  WFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLGICDTKGDLVFVLAGWEGSTADSRILRDAICR-PNGLRVPK
        +F++C+GA+D+T+I   V     P +R +KG I+ N+L  C+   + ++VL+GWEGS  DS++L DA+ R  N L VP+
Subjt:  WFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLGICDTKGDLVFVLAGWEGSTADSRILRDAICR-PNGLRVPK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)

1.3e-18

35.17

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Query:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFT----DPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIAT
        +FL ++ H+++ R +Q  F  S ET+SR FN  L  V+ +  +     QP +N  T    DP   +F++C+G +D+ +I V V   ++  +R   G +  
Subjt:  MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFT----DPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIAT

Query:  NVLGICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKGK
        NVL          +VLAGWEGS +D ++L  A+ R N L+VP+GK
Subjt:  NVLGICDTKGDLVFVLAGWEGSTADSRILRDAICRPNGLRVPKGK

Sequences

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CDS sequence

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ATGTTCCTTCATGTACTGACGCACGACGTGAAGAATCGTGTCATTCAACGGGAGTTCTTGCGGTCCGATGAGACGGTTTCACGACTTTTCAACATGGCACTATTGACTGT
TTTACGCCTCCATGACGAGCTGTTGAAGAAACCACAACCGGTGACAAACATTTTCACAGATCCACGATGGAGGTGGTTTGAGAATTGCCTTGGTGCATTAGACAACACCT
ACATCAAGGTTAACGTGATGACAAGTGATCGACCGAGATACAGAACAAAAAAGGGAAAAATTGCAACAAACGTGCTTGGGATATGTGATACGAAAGGAGATTTAGTTTTC
GTGTTAGCCGGCTGGGAGGGTTCCACTGCGGACTCGCGCATCCTTCGAGATGCCATTTGTAGACCGAATGGCCTAAGGGTGCCGAAGGGTAAATGCAATAACACAGTTCT
TCTTAGTACAATCTTCTCCTCATGA

mRNA sequence

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Protein sequence

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MFLHVLTHDVKNRVIQREFLRSDETVSRLFNMALLTVLRLHDELLKKPQPVTNIFTDPRWRWFENCLGALDNTYIKVNVMTSDRPRYRTKKGKIATNVLGICDTKGDLVF
VLAGWEGSTADSRILRDAICRPNGLRVPKGKCNNTVLLSTIFSS

PI0011998 (gene) of Melon (PI 482460) v1 genome