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PI0012001 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012001
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr06:12253954..12255733
RNA-Seq ExpressionPI0012001
SyntenyPI0012001
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]7.8e-4881.15Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVC LVGHPNDKC E+I+DVN++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQ  NLEDIIKALA+NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKLPAQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-4982.79Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVCGLVGHPNDKC E+I+DVN++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSNQ  NLEDIIKALA+NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKL AQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

KAA0051064.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.1e-4981.15Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVCGLVGHPNDKC +MI+DVN+ R+YDPHGNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQC NLEDIIKALA+NTLSF+QEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKL AQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.6e-4880.33Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G P KVTKCGVCGLVGHPNDKCL++I+DVN++R+YDPH NTYNSGWRDNPNLRWGNDNQK TQA S+SSNQ  NLEDIIKAL +NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKLPAQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.0e-4879.84Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVCGLVGH N+KC E+I+DVN++R+YDPH NTYNSGWRDNPNLRWGNDNQK TQA S+SSNQ  NLEDIIKALA+NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQLE
        QQMTQL  AISK++GKGKLPAQL+
Subjt:  QQMTQLIIAISKLEGKGKLPAQLE

TrEMBL top hitse value%identityAlignment
A0A5A7U6X0 Retrotransposon gag protein3.4e-4981.15Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVCGLVGHPNDKC +MI+DVN+ R+YDPHGNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQC NLEDIIKALA+NTLSF+QEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKL AQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

A0A5A7V0Q7 Retrotransposon gag protein2.2e-4880.33Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G P KVTKCGVCGLVGHPNDKCL++I+DVN++R+YDPH NTYNSGWRDNPNLRWGNDNQK TQA S+SSNQ  NLEDIIKAL +NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKLPAQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

A0A5A7VQ60 Retrotransposon gag protein2.9e-4879.84Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVCGLVGH N+KC E+I+DVN++R+YDPH NTYNSGWRDNPNLRWGNDNQK TQA S+SSNQ  NLEDIIKALA+NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQLE
        QQMTQL  AISK++GKGKLPAQL+
Subjt:  QQMTQLIIAISKLEGKGKLPAQLE

A0A5D3CRR8 Retrotransposon gag protein2.0e-4982.79Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVCGLVGHPNDKC E+I+DVN++RKYDPHGNTYNSGWRDNPNLRWGNDNQK TQA S+SSNQ  NLEDIIKALA+NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKL AQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

E5GBZ4 Retrotransposon gag protein3.8e-4881.15Show/hide
Query:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK
        LT+   G PLKVTKCGVC LVGHPNDKC E+I+DVN++RKYDP+GNTYNSGWRDNPNLRWGNDNQK TQA  +SSNQ  NLEDIIKALA+NTLSFQQEMK
Subjt:  LTTEASG-PLKVTKCGVCGLVGHPNDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMK

Query:  QQMTQLIIAISKLEGKGKLPAQ
        QQMTQL  AISK++GKGKLPAQ
Subjt:  QQMTQLIIAISKLEGKGKLPAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTGTGGTAGAGAAATTTTACGCCGCTAAACTCAATGCTGAAGAGTTTAGTGTAGAAATTAGTGGAAAGGCGATGAGTTTCAACATGGAGGTCATTAATAATTTATA
TGACTTGCCCAGCGATGCTGAAACACCTGGGCATGAATATGTGGTCAACCCAACCAAGAAAATGGCCCGTGAGGCATTGGAGGTCATCGTTTGGCCTGGGGCAGCATGGA
AAATTACACTGACGGGGAAATATCAGCTCTATCCACACCAATTAACCACAGAAGCAAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCC
AATGACAAATGTCTCGAAATGATCAAGGATGTGAATGTCATTCGAAAGTATGACCCCCATGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGG
GAATGACAATCAAAAGCCCACTCAAGCAACATCCTCCTCTTCAAACCAATGTATGAATCTTGAAGACATAATCAAAGCTTTAGCTTCTAACACTCTTTCTTTTCAACAAG
AGATGAAACAACAAATGACTCAACTTATTATCGCCATAAGTAAGTTGGAAGGTAAAGGCAAGCTTCCGGCTCAATTGGAGTGCCATCTCACAAAGGAGTGGGAAGATTCT
TGA
mRNA sequenceShow/hide mRNA sequence
ATGGGTGTGGTAGAGAAATTTTACGCCGCTAAACTCAATGCTGAAGAGTTTAGTGTAGAAATTAGTGGAAAGGCGATGAGTTTCAACATGGAGGTCATTAATAATTTATA
TGACTTGCCCAGCGATGCTGAAACACCTGGGCATGAATATGTGGTCAACCCAACCAAGAAAATGGCCCGTGAGGCATTGGAGGTCATCGTTTGGCCTGGGGCAGCATGGA
AAATTACACTGACGGGGAAATATCAGCTCTATCCACACCAATTAACCACAGAAGCAAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGCTTGGTTGGACATCCC
AATGACAAATGTCTCGAAATGATCAAGGATGTGAATGTCATTCGAAAGTATGACCCCCATGGTAATACATACAATTCGGGATGGAGAGACAACCCAAACTTGAGATGGGG
GAATGACAATCAAAAGCCCACTCAAGCAACATCCTCCTCTTCAAACCAATGTATGAATCTTGAAGACATAATCAAAGCTTTAGCTTCTAACACTCTTTCTTTTCAACAAG
AGATGAAACAACAAATGACTCAACTTATTATCGCCATAAGTAAGTTGGAAGGTAAAGGCAAGCTTCCGGCTCAATTGGAGTGCCATCTCACAAAGGAGTGGGAAGATTCT
TGA
Protein sequenceShow/hide protein sequence
MGVVEKFYAAKLNAEEFSVEISGKAMSFNMEVINNLYDLPSDAETPGHEYVVNPTKKMAREALEVIVWPGAAWKITLTGKYQLYPHQLTTEASGPLKVTKCGVCGLVGHP
NDKCLEMIKDVNVIRKYDPHGNTYNSGWRDNPNLRWGNDNQKPTQATSSSSNQCMNLEDIIKALASNTLSFQQEMKQQMTQLIIAISKLEGKGKLPAQLECHLTKEWEDS