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PI0012018 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012018
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr06:12209283..12210333
RNA-Seq ExpressionPI0012018
SyntenyPI0012018
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026242.1 gag/pol protein [Cucumis melo var. makuwa]6.5e-5466.84Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DLRFVL+EECPP   +NASQ+VRDA++RWTKAN+KAR+YILASMS +LSKKHE       IMDSL+EMFGQPSIQI+ EAIKYVYNARMK+  F
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK
        VREHVL+M+V FNV +MNGAV DE+    +SL   KGQKEGEAN++HS+RF          A SSS  KKIQK+K GKGK PT+ A+ KGKAK
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK

KAA0042123.1 gag/pol protein [Cucumis melo var. makuwa]1.1e-5869.59Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DLRFVLMEEC P P +NASQ+V+DA++ WTKAN+KA +YILASMSD+LSKK E MVTARQIMDSL+E+FGQ SIQI+ EAIKYVYN RMK+ Q 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL
        +REHVL+M+V FNV EMNGAV DE++Q+       KGQKEGEANVAHS+RF          APSSSG KKIQK+K GKGKGPTV A+ KGKAK+
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL

KAA0063152.1 gag/pol protein [Cucumis melo var. makuwa]8.2e-5767.01Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        M+LVI DLRF LMEECPP P +NASQ+VRD ++RWTKAN+KA  Y+LASMSD+LSKKHE M+ ARQIMDSL+EMFGQPSIQI+ E IKYV NARMK+ Q 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL
        VREHVL+M+V  NVA  NG V DE++Q+       KGQKEG ANV+ S+RF          A SSSG KKIQKKK GKGKGP VAA+GKGKAK+
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL

KAA0067441.1 gag/pol protein [Cucumis melo var. makuwa]1.5e-5566.33Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DL FVLM++ PP P +NASQ++RDA+NRWTKAN+KA +YILAS+SD+LSKKHE +VTA QIMDSL +MFGQPSIQI+ EAIKY+YNARMK+ + 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAV------IDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK
        VREHVL M+V FNVA+MNGA+      + ++ QTFQSL   KGQKEGEANVA+SKRF           PSSSG KKIQKKK GKGK    AA+GK KAK
Subjt:  VREHVLDMMVQFNVAEMNGAV------IDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK

TYK00843.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-5568.65Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DLRF+LMEECPP P +NAS+++RDA+NR TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA MK+ Q 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVA
        VREH LDM+V FNVAEMNGAVIDE++Q+       KGQK+GEANVAH +RF          APSSSG +KIQK+K  KGKG T+A
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVA

TrEMBL top hitse value%identityAlignment
A0A5A7SM77 Gag/pol protein3.1e-5466.84Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DLRFVL+EECPP   +NASQ+VRDA++RWTKAN+KAR+YILASMS +LSKKHE       IMDSL+EMFGQPSIQI+ EAIKYVYNARMK+  F
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK
        VREHVL+M+V FNV +MNGAV DE+    +SL   KGQKEGEAN++HS+RF          A SSS  KKIQK+K GKGK PT+ A+ KGKAK
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK

A0A5A7TFX6 Gag/pol protein5.5e-5969.59Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DLRFVLMEEC P P +NASQ+V+DA++ WTKAN+KA +YILASMSD+LSKK E MVTARQIMDSL+E+FGQ SIQI+ EAIKYVYN RMK+ Q 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL
        +REHVL+M+V FNV EMNGAV DE++Q+       KGQKEGEANVAHS+RF          APSSSG KKIQK+K GKGKGPTV A+ KGKAK+
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL

A0A5A7V4I0 Gag/pol protein4.0e-5767.01Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        M+LVI DLRF LMEECPP P +NASQ+VRD ++RWTKAN+KA  Y+LASMSD+LSKKHE M+ ARQIMDSL+EMFGQPSIQI+ E IKYV NARMK+ Q 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL
        VREHVL+M+V  NVA  NG V DE++Q+       KGQKEG ANV+ S+RF          A SSSG KKIQKKK GKGKGP VAA+GKGKAK+
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKL

A0A5A7VPE8 Gag/pol protein7.5e-5666.33Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DL FVLM++ PP P +NASQ++RDA+NRWTKAN+KA +YILAS+SD+LSKKHE +VTA QIMDSL +MFGQPSIQI+ EAIKY+YNARMK+ + 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAV------IDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK
        VREHVL M+V FNVA+MNGA+      + ++ QTFQSL   KGQKEGEANVA+SKRF           PSSSG KKIQKKK GKGK    AA+GK KAK
Subjt:  VREHVLDMMVQFNVAEMNGAV------IDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAK

A0A5D3BM47 Gag/pol protein5.7e-5668.65Show/hide
Query:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF
        MILVI DLRF+LMEECPP P +NAS+++RDA+NR TKAN+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ EAIKYVYNA MK+ Q 
Subjt:  MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQF

Query:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVA
        VREH LDM+V FNVAEMNGAVIDE++Q+       KGQK+GEANVAH +RF          APSSSG +KIQK+K  KGKG T+A
Subjt:  VREHVLDMMVQFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATAACCGCTGGACAAA
GGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGA
TGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGATTGCCAATTTGTTAGAGAACATGTTCTCGACATGATGGTC
CAATTCAACGTGGCAGAAATGAACGGGGCGGTCATTGACGAGCAAAATCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCA
TTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGATTAAGAAAATCCAGAAGAAGAAAGAAGGAAAGGGGAAAGGTCCAACTG
TTGCTGCTAAAGGCAAGGGGAAGGCTAAGCTAAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTGTTCGAAATGCATCCCAGACCGTCAGGGATGCACATAACCGCTGGACAAA
GGCCAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGA
TGTTTGGACAACCGTCCATTCAAATCCGGCACGAGGCTATTAAATACGTTTATAATGCCCGTATGAAGGATTGCCAATTTGTTAGAGAACATGTTCTCGACATGATGGTC
CAATTCAACGTGGCAGAAATGAACGGGGCGGTCATTGACGAGCAAAATCAGACTTTTCAGTCTCTTATGAAAAATAAGGGACAAAAAGAAGGAGAGGCAAATGTTGCCCA
TTCCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTCTGGGATTAAGAAAATCCAGAAGAAGAAAGAAGGAAAGGGGAAAGGTCCAACTG
TTGCTGCTAAAGGCAAGGGGAAGGCTAAGCTAAGTTAG
Protein sequenceShow/hide protein sequence
MILVIDDLRFVLMEECPPSPVRNASQTVRDAHNRWTKANEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHEAIKYVYNARMKDCQFVREHVLDMMV
QFNVAEMNGAVIDEQNQTFQSLMKNKGQKEGEANVAHSKRFQKGSSSGTKSAPSSSGIKKIQKKKEGKGKGPTVAAKGKGKAKLS