CuGenDBv2

Gene ID	PI0012053
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr02:16153976..16156047
RNA-Seq Expression	PI0012053
Synteny	PI0012053
Gene Ontology terms	GO:0016020 - membrane (cellular component)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0036886.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]

4.1e-50

58.62

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLW+GKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +G SLW V+S +GRSWC RA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ
         HV M+VG+G RCRVWLDPWLQGG+I+ + V    +     RR   L  FID +GEW WPRVS EL+DLW+RVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]

5.5e-47

57.47

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLWRGKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +G SLW V+S +G+SWCLRA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ
          V M+VG+G   RVWLDPWL  G+I+ + V    M     RR   L  FID DGEW WPRVS EL+DLW+RVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ

TYJ96685.1 zf-RVT domain-containing protein [Cucumis melo var. makuwa]

4.1e-50

58.62

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLW+GKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +G SLW V+S +GRSWC RA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ
         HV M+VG+G RCRVWLDPWLQGG+I+ + V    +     RR   L  FID +GEW WPRVS EL+DLW+RVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ

TYK18951.1 uncharacterized protein E5676_scaffold418G00380 [Cucumis melo var. makuwa]

1.0e-40

62.88

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLWRGKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +  SLW V+S +GRSWCLRA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVR
         HV M+VG+G RCRVWLDPWLQGG+I+ R VR
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVR

XP_031745730.1 uncharacterized protein LOC116406187 [Cucumis sativus]

2.0e-44

52.6

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L +YLWRGK+  RG AKVAW EVC PFDEGGL+IR+G  WN A  LKIL L+L  SGSL W+ W  S   +G SLW +++ +GRSWC R +LR+ D L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLCFIDSDGEWRWPRVSWELLDLWDRVQ
         HV MEVG+GR+ RVWL PW+QGG II ++                + F+  DG+WRWP V  +L+D+WDRVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLCFIDSDGEWRWPRVSWELLDLWDRVQ

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T440 Zf-RVT domain-containing protein

2.0e-50

58.62

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLW+GKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +G SLW V+S +GRSWC RA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ
         HV M+VG+G RCRVWLDPWLQGG+I+ + V    +     RR   L  FID +GEW WPRVS EL+DLW+RVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ

A0A5A7TWG5 Reverse transcriptase domain-containing protein

4.9e-41

62.88

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLWRGKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +  SLW V+S +GRSWCLRA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVR
         HV M+VG+G RCRVWLDPWLQGG+I+ R VR
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVR

A0A5A7V3Z0 Reverse transcriptase domain-containing protein

2.7e-47

57.47

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLWRGKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +G SLW V+S +G+SWCLRA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ
          V M+VG+G   RVWLDPWL  G+I+ + V    M     RR   L  FID DGEW WPRVS EL+DLW+RVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ

A0A5D3BDZ6 Zf-RVT domain-containing protein

2.0e-50

58.62

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLW+GKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +G SLW V+S +GRSWC RA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ
         HV M+VG+G RCRVWLDPWLQGG+I+ + V    +     RR   L  FID +GEW WPRVS EL+DLW+RVQ
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLC-FIDSDGEWRWPRVSWELLDLWDRVQ

A0A5D3D5X6 Reverse transcriptase domain-containing protein

4.9e-41

62.88

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Query:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR
        +L SYLWRGKE  RGG KVAW +VC PF+EGGL IR+G  WN A  LKIL LMLT+SGSL W+ W  +   +  SLW V+S +GRSWCLRA+LR+ + L+
Subjt:  LLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGW--SLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLR

Query:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVR
         HV M+VG+G RCRVWLDPWLQGG+I+ R VR
Subjt:  EHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

9.8e-10

30.65

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Query:  SYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGWSLCSEGGSLWSV--NSEIGRSWCLRAMLRQLDSLREHV
        S+LW G E+    AKVAW +VC P DEGGL IR  K  N                             GS WS+  N+ +G SW  + +L+        V
Subjt:  SYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACILKILRLMLTSSGSLWWLGWSLCSEGGSLWSV--NSEIGRSWCLRAMLRQLDSLREHV

Query:  HMEVGDGRRCRVWLDPWLQGGSII
          ++ +G     W D W + G +I
Subjt:  HMEVGDGRRCRVWLDPWLQGGSII

Sequences

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CDS sequence

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ATGGACTTATCTGCTTCCAATTCAAACGACCTAAATCGGTGGAGTGGATTCTTTCCCATGGTCCATGGCATCTTGGGGGCAAACCAATGCTTCTCCGCAAATGGGTTCCA
GGAGTTGGTAGGAGATTATCATGGTACTTCTGGTCCACCTAGGTTTGCGATGAGGTGGACCTTCATAAGGCTTACGATTTGGCTTTTGATGTCGTATTTATGGAGGGGCA
AGGAGATTAGGAGAGGGGGTGCGAAAGTTGCATGGAAGGAGGTGTGTCGCCCTTTTGATGAGGGGGGCCTTAATATTCGTGAGGGGAAGATGTGGAATACTGCATGTATT
TTGAAGATTCTTCGGTTGATGTTGACTAGTTCGGGGTCTTTGTGGTGGCTTGGGTGGAGCCTATGTTCTGAAGGGGGGTCGTTGTGGTCTGTGAACTCTGAGATTGGTCG
GTCCTGGTGTCTTCGTGCTATGCTGCGACAACTTGATAGCCTTAGAGAGCATGTCCATATGGAGGTTGGTGATGGAAGACGTTGTCGTGTGTGGCTGGACCCTTGGTTGC
AGGGTGGCTCGATCATTCACAGATGGGTGAGAGGGTGGTTTATGATGCGGCGAGTAGTAAGGAGGCTATGCTTTCTGTGTTTCATTGATTCGGATGGTGAGTGGAGATGG
CCGAGGGTTTCTTGGGAGTTACTTGATTTGTGGGATAGGGTTCAGGTTTCCGTCCGTGTTTGA

mRNA sequence

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Protein sequence

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MDLSASNSNDLNRWSGFFPMVHGILGANQCFSANGFQELVGDYHGTSGPPRFAMRWTFIRLTIWLLMSYLWRGKEIRRGGAKVAWKEVCRPFDEGGLNIREGKMWNTACI
LKILRLMLTSSGSLWWLGWSLCSEGGSLWSVNSEIGRSWCLRAMLRQLDSLREHVHMEVGDGRRCRVWLDPWLQGGSIIHRWVRGWFMMRRVVRRLCFLCFIDSDGEWRW
PRVSWELLDLWDRVQVSVRV

PI0012053 (gene) of Melon (PI 482460) v1 genome