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PI0012062 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012062
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr01:14957386..14960975
RNA-Seq ExpressionPI0012062
SyntenyPI0012062
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.2e-6966.36Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MAENSQSF NRASELDNSLTKEVS                    PLKVTKCGVCGLVGHPNDKCP +IEDVN++RKYDPHGN YNSGWR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTEGTFKYALIASVTVP
        QK TQA S+ SNQG NLEDI+KALATNTLSFQQEMKQQMTQ+TTAI K++GKGKL AQS++ANVSA+SLR GKILDTP+++EK            S  +P
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTEGTFKYALIASVTVP

Query:  RNLAERCTYSSGQANAS
         N    C     + N S
Subjt:  RNLAERCTYSSGQANAS

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.5e-6975.41Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MA NSQSFGNR SELDNSLTKEVS                    PLKVTKCGVCGLVGHPNDKCP +IEDVN++R+YDP+GN YNSGWR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK
        QK TQA  + SNQG NLEDI+KALATNTLSFQQEMKQQMTQ+TTAI K++GKGKLLAQSDHANVSAISLR GKILDTP+++EK
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.5e-6672.58Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        M ENSQSFGNRASELDNSLTKEVS                    P KVTKCGVCGLVGHPNDKC  +IEDVN++R+YDPH N YNSGWR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTE
        QK TQA S+ SNQG NLEDI+KAL TNTLSFQQEMKQQMTQ+TTAI K++GKGKL AQ D+ANVSAISLR GKILDTP+++EK  E
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTE

KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.8e-6773.22Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MAENSQSFGNRA ELDNSLTKEVS                    PLKVTKCGVCGLVGHPNDKCP +IEDVN++R+YDPHGN YNS WR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK
        QK TQA S+ SNQG NL+DI+KAL TNTLSFQQEMKQQMTQ+TTAI K++GKGKLLAQ +H NVSAI LR GKILDTP+++EK
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.8e-6773.77Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MAENS+SFGNRASELDNSLTKEVS                    P KVTKCGVCGLVGHPNDKCP +IEDVN++R+YDPH N YNSGWR+N NLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK
        QK TQA S+ SNQG NLEDI+KALATNTLSFQQ+MKQQMTQ+TTAI K++GKGKL AQ DHANVSAISLR GKILDTP+++EK
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK

TrEMBL top hitse value%identityAlignment
A0A5A7UID2 Retrotransposon gag protein1.2e-6975.41Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MA NSQSFGNR SELDNSLTKEVS                    PLKVTKCGVCGLVGHPNDKCP +IEDVN++R+YDP+GN YNSGWR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK
        QK TQA  + SNQG NLEDI+KALATNTLSFQQEMKQQMTQ+TTAI K++GKGKLLAQSDHANVSAISLR GKILDTP+++EK
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK

A0A5A7V0Q7 Retrotransposon gag protein7.3e-6772.58Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        M ENSQSFGNRASELDNSLTKEVS                    P KVTKCGVCGLVGHPNDKC  +IEDVN++R+YDPH N YNSGWR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTE
        QK TQA S+ SNQG NLEDI+KAL TNTLSFQQEMKQQMTQ+TTAI K++GKGKL AQ D+ANVSAISLR GKILDTP+++EK  E
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTE

A0A5A7V1C6 Retrotransposon gag protein3.3e-6773.22Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MAENSQSFGNRA ELDNSLTKEVS                    PLKVTKCGVCGLVGHPNDKCP +IEDVN++R+YDPHGN YNS WR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK
        QK TQA S+ SNQG NL+DI+KAL TNTLSFQQEMKQQMTQ+TTAI K++GKGKLLAQ +H NVSAI LR GKILDTP+++EK
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK

A0A5D3CB46 Retrotransposon gag protein3.3e-6773.77Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MAENS+SFGNRASELDNSLTKEVS                    P KVTKCGVCGLVGHPNDKCP +IEDVN++R+YDPH N YNSGWR+N NLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK
        QK TQA S+ SNQG NLEDI+KALATNTLSFQQ+MKQQMTQ+TTAI K++GKGKL AQ DHANVSAISLR GKILDTP+++EK
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEK

A0A5D3CRR8 Retrotransposon gag protein1.6e-6966.36Show/hide
Query:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN
        MAENSQSF NRASELDNSLTKEVS                    PLKVTKCGVCGLVGHPNDKCP +IEDVN++RKYDPHGN YNSGWR+NPNLRWGNDN
Subjt:  MAENSQSFGNRASELDNSLTKEVS-------------------GPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDN

Query:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTEGTFKYALIASVTVP
        QK TQA S+ SNQG NLEDI+KALATNTLSFQQEMKQQMTQ+TTAI K++GKGKL AQS++ANVSA+SLR GKILDTP+++EK            S  +P
Subjt:  QKPTQATSSFSNQGMNLEDIVKALATNTLSFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTEGTFKYALIASVTVP

Query:  RNLAERCTYSSGQANAS
         N    C     + N S
Subjt:  RNLAERCTYSSGQANAS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAATTCTCAAAGTTTTGGGAATAGAGCATCGGAACTTGACAACTCTCTAACAAAAGAGGTAAGTGGTCCTCTGAAAGTAACCAAGTGTGGAGTTTGTGGCTT
AGTTGGACATCCAAATGACAAATGTCCCAACTTGATCGAGGATGTGAATGTCATTCGAAAGTATGACCCCCATGGTAATAAATACAATTCGGGATGGAGAGAAAACCCAA
ACTTGAGATGGGGGAATGACAACCAAAAGCCCACTCAAGCAACATCCTCCTTTTCAAACCAAGGTATGAATCTTGAAGACATTGTCAAAGCTTTAGCTACTAACACTCTT
TCTTTTCAACAAGAGATGAAACAACAAATGACTCAAATTACTACCGCCATACGCAAGTTGGAAGGAAAAGGCAAGCTTCTGGCCCAATCAGACCATGCCAACGTGAGTGC
CATCTCACTAAGGTGTGGTAAGATTCTTGACACCCCTTCTAGTGAAGAAAAAGACACCGAGGGGACTTTCAAGTATGCGTTAATAGCTTCCGTCACGGTTCCTCGTAATC
TCGCCGAAAGATGCACTTATTCTTCTGGTCAAGCCAATGCTTCGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAATTCTCAAAGTTTTGGGAATAGAGCATCGGAACTTGACAACTCTCTAACAAAAGAGGTAAGTGGTCCTCTGAAAGTAACCAAGTGTGGAGTTTGTGGCTT
AGTTGGACATCCAAATGACAAATGTCCCAACTTGATCGAGGATGTGAATGTCATTCGAAAGTATGACCCCCATGGTAATAAATACAATTCGGGATGGAGAGAAAACCCAA
ACTTGAGATGGGGGAATGACAACCAAAAGCCCACTCAAGCAACATCCTCCTTTTCAAACCAAGGTATGAATCTTGAAGACATTGTCAAAGCTTTAGCTACTAACACTCTT
TCTTTTCAACAAGAGATGAAACAACAAATGACTCAAATTACTACCGCCATACGCAAGTTGGAAGGAAAAGGCAAGCTTCTGGCCCAATCAGACCATGCCAACGTGAGTGC
CATCTCACTAAGGTGTGGTAAGATTCTTGACACCCCTTCTAGTGAAGAAAAAGACACCGAGGGGACTTTCAAGTATGCGTTAATAGCTTCCGTCACGGTTCCTCGTAATC
TCGCCGAAAGATGCACTTATTCTTCTGGTCAAGCCAATGCTTCGTGA
Protein sequenceShow/hide protein sequence
MAENSQSFGNRASELDNSLTKEVSGPLKVTKCGVCGLVGHPNDKCPNLIEDVNVIRKYDPHGNKYNSGWRENPNLRWGNDNQKPTQATSSFSNQGMNLEDIVKALATNTL
SFQQEMKQQMTQITTAIRKLEGKGKLLAQSDHANVSAISLRCGKILDTPSSEEKDTEGTFKYALIASVTVPRNLAERCTYSSGQANAS