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PI0012082 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012082
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr07:15076914..15077144
RNA-Seq ExpressionPI0012082
SyntenyPI0012082
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036813.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]1.1e-0949.35Show/hide
Query:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV
        +S+A+S   R   NV E+L DR+ QRL+ G+     +PEKKY  E+LK LGA  F GT  P   E WL  +EKCFRV
Subjt:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV

KAA0037861.1 hypothetical protein E6C27_scaffold36G00200 [Cucumis melo var. makuwa]1.5e-1460.27Show/hide
Query:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCF
        MD EA S+N   RR+  E LYDRV QRLI  L+++PEKK++IE+LK LGA +F GT  P++ EKW RTLEKCF
Subjt:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCF

KGN58005.1 hypothetical protein Csa_009787 [Cucumis sativus]4.4e-1458.11Show/hide
Query:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFR
        M+SEA SVN    +   E +YDRV QRL+  ++ +PEKK+ IE+LK LGA EF GT +PE+ EKW+RTLEKCFR
Subjt:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFR

KGN61535.1 hypothetical protein Csa_006696 [Cucumis sativus]1.8e-1253.95Show/hide
Query:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRVM
        +DSEA ++N   RR   E LYDR  QRLI  L+++ +K + IE++K LGA EF G    E+ EKW+RTLEKCFRVM
Subjt:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRVM

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]1.1e-0949.35Show/hide
Query:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV
        +S+A+S   R   NV E+L DR+ QRL+ G+     +PEKKY  E+LK LGA  F GT  P   E WL  +EKCFRV
Subjt:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV

TrEMBL top hitse value%identityAlignment
A0A0A0L7X2 Uncharacterized protein2.1e-1458.11Show/hide
Query:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFR
        M+SEA SVN    +   E +YDRV QRL+  ++ +PEKK+ IE+LK LGA EF GT +PE+ EKW+RTLEKCFR
Subjt:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFR

A0A0A0LI31 Uncharacterized protein8.9e-1353.95Show/hide
Query:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRVM
        +DSEA ++N   RR   E LYDR  QRLI  L+++ +K + IE++K LGA EF G    E+ EKW+RTLEKCFRVM
Subjt:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRVM

A0A5D3BB91 Reverse transcriptase5.4e-1049.35Show/hide
Query:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV
        +S+A+S   R   NV E+L DR+ QRL+ G+     +PEKKY  E+LK LGA  F GT  P   E WL  +EKCFRV
Subjt:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV

A0A5D3CDA4 Uncharacterized protein7.2e-1560.27Show/hide
Query:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCF
        MD EA S+N   RR+  E LYDRV QRLI  L+++PEKK++IE+LK LGA +F GT  P++ EKW RTLEKCF
Subjt:  MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCF

A0A5D3DES5 DNA/RNA polymerases superfamily protein5.4e-1049.35Show/hide
Query:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV
        +S+A+S       N+ E+L DR+ QRLI G+     +PEKKY IE+LK LGA  F+GT  P   E WL  +EKCFRV
Subjt:  DSEAQSVNSRGRRNVVEELYDRVVQRLIYGL---SREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAGAGGCACAATCAGTAAATTCAAGAGGTAGAAGAAATGTGGTGGAGGAGTTATATGATCGTGTGGTGCAACGACTGATATATGGTTTATCTAGGGAACCAGA
GAAGAAGTATGAAATAGAACAACTTAAGGAGTTAGGTGCTAAGGAATTTATAGGAACGGGGGAACCTGAACAACCGGAGAAATGGTTGCGGACGTTGGAGAAATGCTTTC
GAGTAATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAGAGGCACAATCAGTAAATTCAAGAGGTAGAAGAAATGTGGTGGAGGAGTTATATGATCGTGTGGTGCAACGACTGATATATGGTTTATCTAGGGAACCAGA
GAAGAAGTATGAAATAGAACAACTTAAGGAGTTAGGTGCTAAGGAATTTATAGGAACGGGGGAACCTGAACAACCGGAGAAATGGTTGCGGACGTTGGAGAAATGCTTTC
GAGTAATGTAG
Protein sequenceShow/hide protein sequence
MDSEAQSVNSRGRRNVVEELYDRVVQRLIYGLSREPEKKYEIEQLKELGAKEFIGTGEPEQPEKWLRTLEKCFRVM