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PI0012092 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012092
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr12:20373414..20373623
RNA-Seq ExpressionPI0012092
SyntenyPI0012092
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025948.1 retrotransposon protein [Cucumis melo var. makuwa]3.3e-2177.94Show/hide
Query:  TSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        TSSSRAP HIWT +EEA+LVECLV+LVSS GWR DNGTFR G LAQ QRMMAEKLSGCNI+ V  I C
Subjt:  TSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

KAA0061240.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-2168.12Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M++S+RAP H+WTK+EE  LVECL+ELVS GGW+FDNGTF PGDLAQ  RMMA+KL GC +R +  IDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

KAA0062209.1 retrotransposon protein [Cucumis melo var. makuwa]7.4e-2168.12Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M++S+RAP H+WTKEEE  LVECL++LVS GGW+ DNGTFRPG LAQ  RMMAEKL GC +R ++ IDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]3.3e-2175.36Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M S SRAP H WTKEEE + VECLVELVSSGGWR DNGTF+PG LAQ QRMMAEKL G NI+   TIDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

XP_031739738.1 uncharacterized protein LOC116403265 [Cucumis sativus]5.7e-2171.01Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        MTSSSRAP H+WTKEEEA LVEC+VELVS+GGW+ +NGTFRPG LAQ  R+MA KL GCN+     IDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.6e-2175.36Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M S SRAP H WTKEEE + VECLVELVSSGGWR DNGTF+PG LAQ QRMMAEKL G NI+   TIDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

A0A5A7SIE9 Retrotransposon protein1.6e-2177.94Show/hide
Query:  TSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        TSSSRAP HIWT +EEA+LVECLV+LVSS GWR DNGTFR G LAQ QRMMAEKLSGCNI+ V  I C
Subjt:  TSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

A0A5A7U0H7 Retrotransposon protein1.6e-2175.36Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M S SRAP H WTKEEE + VECLVELVSSGGWR DNGTF+PG LAQ QRMMAEKL G NI+   TIDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

A0A5A7VKT2 Retrotransposon protein3.6e-2169.57Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M++S+RAP H+WTKEEE  LVECL+ELVS GGW+ DNGTFRPG LAQ  RMMAEKL GC +R    IDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

A0A5D3BLT9 Retrotransposon protein2.1e-2168.12Show/hide
Query:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC
        M++S+RAP H+WTK+EE  LVECL+ELVS GGW+FDNGTF PGDLAQ  RMMA+KL GC +R +  IDC
Subjt:  MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGTTCTTCACGAGCACCTAACCACATTTGGACCAAAGAGGAAGAAGCCAGACTCGTCGAGTGCTTGGTGGAGTTGGTCTCCTCCGGTGGGTGGAGATTCGATAA
CGGTACCTTCAGACCTGGGGACCTCGCACAACAGCAACGGATGATGGCAGAGAAGCTATCGGGCTGTAACATCCGGAGGGTTCTGACAATAGATTGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAGTTCTTCACGAGCACCTAACCACATTTGGACCAAAGAGGAAGAAGCCAGACTCGTCGAGTGCTTGGTGGAGTTGGTCTCCTCCGGTGGGTGGAGATTCGATAA
CGGTACCTTCAGACCTGGGGACCTCGCACAACAGCAACGGATGATGGCAGAGAAGCTATCGGGCTGTAACATCCGGAGGGTTCTGACAATAGATTGTTAG
Protein sequenceShow/hide protein sequence
MTSSSRAPNHIWTKEEEARLVECLVELVSSGGWRFDNGTFRPGDLAQQQRMMAEKLSGCNIRRVLTIDC