CuGenDBv2

Gene ID	PI0012096
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Translation initiation factor 1
Genome location	tig00003741:55404..55649
RNA-Seq Expression	PI0012096
Synteny	PI0012096
Gene Ontology terms	GO:0006413 - translational initiation (biological process) GO:0009507 - chloroplast (cellular component) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

A5J1W9.1 RecName: Full=Translation initiation factor IF-1, chloroplastic [Cucumis sativus]

8.4e-18

69.33

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISE LITESLTNDMFWVCL+NED ILGYVSGRIRHSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

ASY96426.1 translation initiation factor 1 [Cucumis melo subsp. agrestis]

1.2e-16

86.79

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDS
        MKEQKRISEGLITESLTNDMFWVCLDNE+ ILGYVSGRI+HSFIHI L N++S
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDS

ASY96600.1 translation initiation factor 1 [Cucumis melo var. conomon]

4.2e-17

88.68

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDS
        MKEQKRISEGLITESLTNDMFWVCLDNED ILGYVSGRI+HSFIHI L N++S
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDS

QJF46419.1 translation initiation factor 1 [Cucumis melo]

4.2e-17

88.68

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDS
        MKEQKRISEGLITESLTNDMFWVCLDNED ILGYVSGRI+HSFIHI L N++S
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDS

YP_004841818.1 translational initiation factor 1 [Cucumis melo subsp. melo]

1.7e-18

70.67

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISEGLITESLTNDMFWVCLDNED ILGYVSGRI+HSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU46 translational initiation factor 1

8.2e-19

70.67

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISEGLITESLTNDMFWVCLDNED ILGYVSGRI+HSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

A0A1X9Q1P3 Translation initiation factor 1

4.1e-18

69.33

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISE LITESLTNDMFWVCL+NED ILGYVSGRIRHSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

A0A343UM67 InfA

4.1e-18

69.33

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISE LITESLTNDMFWVCL+NED ILGYVSGRIRHSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

A0A6M8YGU1 Translational initiation factor 1

8.2e-19

70.67

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISEGLITESLTNDMFWVCLDNED ILGYVSGRI+HSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

G3ETT2 Translational initiation factor 1

8.2e-19

70.67

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISEGLITESLTNDMFWVCLDNED ILGYVSGRI+HSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

SwissProt top hits

e value

%identity

Alignment

A1XFZ0 Translation initiation factor IF-1, chloroplastic

2.4e-15

59.74

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND
        MKEQK I EGLITESL N MFWV LDNED +LGYVSGRIR SFI I                      RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND

A5J1W9 Translation initiation factor IF-1, chloroplastic

1.1e-20

69.33

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND
        MKEQKRISE LITESLTNDMFWVCL+NED ILGYVSGRIRHSFIHI                    RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI--------------------RLRNKDSND

P08698 Translation initiation factor IF-1, chloroplastic

2.0e-14

59.74

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND
        MKEQK I EGLITESL N MFWV LDNED ILGYVSGRIR S I I                      RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND

Q6EW17 Translation initiation factor IF-1, chloroplastic

2.4e-15

59.74

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND
        MKEQK I EGLITESL N MFWV LDNED +LGYVSGRIR SFI I                      RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND

Q95GN8 Translation initiation factor IF-1, chloroplastic

2.4e-15

59.74

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Query:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND
        MKEQK I EGLITESL N MFWV LDNED +LGYVSGRIR SFI I                      RLRNKDSND
Subjt:  MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI----------------------RLRNKDSND

Arabidopsis top hits

e value

%identity

Alignment

AT4G11175.1 Nucleic acid-binding, OB-fold-like protein

3.8e-08

59.52

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Query:  KRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI
        K + EGL+TESL N MF V L+N D ILGY+ G+IR +FI I
Subjt:  KRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHI

Sequences

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CDS sequence

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ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATATGTTTTGGGTTTGTTTAGATAATGAGGATACAATTCTAGGTTACGTTTCAGG
AAGGATTCGACATAGTTTTATCCATATTAGACTACGAAACAAAGATTCGAATGATTGGGTGAAGTAG

mRNA sequence

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ATGAAAGAGCAAAAAAGGATTTCTGAAGGTTTAATTACTGAATCACTTACCAATGATATGTTTTGGGTTTGTTTAGATAATGAGGATACAATTCTAGGTTACGTTTCAGG
AAGGATTCGACATAGTTTTATCCATATTAGACTACGAAACAAAGATTCGAATGATTGGGTGAAGTAG

Protein sequence

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MKEQKRISEGLITESLTNDMFWVCLDNEDTILGYVSGRIRHSFIHIRLRNKDSNDWVK

PI0012096 (gene) of Melon (PI 482460) v1 genome