; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012199 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012199
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr04:19585749..19587285
RNA-Seq ExpressionPI0012199
SyntenyPI0012199
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038454.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-0634.75Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        PY + YN  W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL  +T             + FQQE     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE
         H NVS   LR G++ +     E  V S+ L      + KE
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE

KAA0050529.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-0736.64Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        P+ + YNL W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL   TL+             FQQE     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSL
         H NVS   LR G++       E  V S+ L
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSL

TYK04216.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.0e-0734.75Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        P+ + YN  W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL  +TL+             FQQE     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE
        +H NVS   LR G++   +   E  V S+ L      + KE
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE

TYK11282.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.5e-0752.63Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQE
        P+ + YNL W  NPN+RWG+   K  +   PP+SSNQGT LE+++KALT  TL+FQ+
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQE

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]7.5e-0732.37Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        P+ + YNL W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL  +TL+             FQQ+     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGA-VRIKKKKETLFSLHQACIATTFSSPANPVTGHDRLSPPF
         H NVS   LR G++       E  V S+ L    + + K+E + +   +  +    SP N  T +    PPF
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGA-VRIKKKKETLFSLHQACIATTFSSPANPVTGHDRLSPPF

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032913.6e-0732.37Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        P+ + YNL W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL  +TL+             FQQ+     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGA-VRIKKKKETLFSLHQACIATTFSSPANPVTGHDRLSPPF
         H NVS   LR G++       E  V S+ L    + + K+E + +   +  +    SP N  T +    PPF
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGA-VRIKKKKETLFSLHQACIATTFSSPANPVTGHDRLSPPF

A0A5A7T4R3 Retrotransposon gag protein6.2e-0734.75Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        PY + YN  W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL  +T             + FQQE     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE
         H NVS   LR G++ +     E  V S+ L      + KE
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE

A0A5A7UAL2 Retrotransposon gag protein1.6e-0736.64Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        P+ + YNL W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL   TL+             FQQE     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSL
         H NVS   LR G++       E  V S+ L
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSL

A0A5D3C1D3 Retrotransposon gag protein9.5e-0834.75Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP
        P+ + YN  W  NPN+RWG+   K  +   PP+SSNQGT LE+++KAL  +TL+             FQQE     T      +  D K    K+  Q P
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFP

Query:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE
        +H NVS   LR G++   +   E  V S+ L      + KE
Subjt:  SHTNVSDSFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKE

A0A5D3CJ21 Retrotransposon gag protein3.6e-0752.63Show/hide
Query:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQE
        P+ + YNL W  NPN+RWG+   K  +   PP+SSNQGT LE+++KALT  TL+FQ+
Subjt:  PYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGTTCCATATGTTGACAATTATAACTTAGAATGGAGTTACAATCCAAATATGAGATGGGGAAGTAAGGAACCTAAGCCCATCAACGTCGCCCCTCCTCCTTCATC
ATCGAATCAAGGTACGTTCTTAGAAGAATTGGTTAAAGCTTTAACTATTAGCACCCTCACTTTTCAGGAAACACAAGCAAAGCTACAAGGAAGCAACCCATTTCAACAAG
AGTTTGGAACCAACTCCACCAACACGGGTAATCAATTCAACCATTCGGATACAAAAGAAAGAGAATTTAAAGTTGAACATCAATTTCCCTCTCACACCAATGTAAGTGAT
TCCTTTTTACGAAGAGGAAGACTTACACACTTTATTGATGACGATGAACCTATGGTAATAAGTAGGTCATTGGGTGCAGTTAGAATAAAAAAGAAAAAAGAAACTCTTTT
TTCTCTTCATCAAGCCTGCATCGCCACCACCTTCTCTTCTCCAGCCAACCCAGTCACTGGGCACGATCGTTTGTCGCCACCTTTCTCACCAGATCTTTGGGTGAATGTTA
TTGGATCTTTTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGCAAGTTCCATATGTTGACAATTATAACTTAGAATGGAGTTACAATCCAAATATGAGATGGGGAAGTAAGGAACCTAAGCCCATCAACGTCGCCCCTCCTCCTTCATC
ATCGAATCAAGGTACGTTCTTAGAAGAATTGGTTAAAGCTTTAACTATTAGCACCCTCACTTTTCAGGAAACACAAGCAAAGCTACAAGGAAGCAACCCATTTCAACAAG
AGTTTGGAACCAACTCCACCAACACGGGTAATCAATTCAACCATTCGGATACAAAAGAAAGAGAATTTAAAGTTGAACATCAATTTCCCTCTCACACCAATGTAAGTGAT
TCCTTTTTACGAAGAGGAAGACTTACACACTTTATTGATGACGATGAACCTATGGTAATAAGTAGGTCATTGGGTGCAGTTAGAATAAAAAAGAAAAAAGAAACTCTTTT
TTCTCTTCATCAAGCCTGCATCGCCACCACCTTCTCTTCTCCAGCCAACCCAGTCACTGGGCACGATCGTTTGTCGCCACCTTTCTCACCAGATCTTTGGGTGAATGTTA
TTGGATCTTTTAGATGA
Protein sequenceShow/hide protein sequence
MQVPYVDNYNLEWSYNPNMRWGSKEPKPINVAPPPSSSNQGTFLEELVKALTISTLTFQETQAKLQGSNPFQQEFGTNSTNTGNQFNHSDTKEREFKVEHQFPSHTNVSD
SFLRRGRLTHFIDDDEPMVISRSLGAVRIKKKKETLFSLHQACIATTFSSPANPVTGHDRLSPPFSPDLWVNVIGSFR