; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012237 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012237
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag-pol polyprotein
Genome locationchr09:7566300..7568402
RNA-Seq ExpressionPI0012237
SyntenyPI0012237
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043382.1 gag-pol polyprotein [Cucumis melo var. makuwa]5.7e-2331.97Show/hide
Query:  YDRKRKD------NQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQL
        Y+R  KD       +  + + C EC G GH QSEC  +L+ ++K L ATLS++++    + E+   AL++  I   +EE +  ++ ++ D    M    L
Subjt:  YDRKRKD------NQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQL

Query:  NE--MKVNWEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTV
        NE  +K  WE D   +  Q++RI  L+ +N   L +I  +K +L+  R++ E ++KS +M+  GT  L+D+L  GK  ++K+G+GF   +     + + V
Subjt:  NE--MKVNWEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTV

Query:  FVPAQHSHMLDQMSVSKE---PTSYPVIR--NQTRKWVCHFCGK
        FV   +S+  DQ  ++KE     + P I+  N+ ++W+C+FCGK
Subjt:  FVPAQHSHMLDQMSVSKE---PTSYPVIR--NQTRKWVCHFCGK

KAA0045252.1 gag-proteinase polyprotein [Cucumis melo var. makuwa]2.2e-2736.13Show/hide
Query:  NSKPYDRKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNE
        N +  D  RK     R   CREC G GHYQ+ECP FLRRQ+K   ATLS+ D+    E ++ + A           E  SG   E    I C       E
Subjt:  NSKPYDRKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNE

Query:  MKVNWEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPA
        ++V W+ D      QK+RI +L+ +N RL+  IS +K  L+  + E ++  KS +MLNSGT++L+ ILNSG+   N+ G+GFD     ++ +++  FVPA
Subjt:  MKVNWEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPA

Query:  QHSHMLDQMSVSK--EPTSYPVIRNQTRKWVCHFCGKE
          +   D +  +K   P++      +T KW+CH+CG++
Subjt:  QHSHMLDQMSVSK--EPTSYPVIRNQTRKWVCHFCGKE

KAA0053200.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-2330Show/hide
Query:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--
        +K  D + +R   CRECGG GHYQ+ECP F R+Q+K    TLS+++   S +    + A      +E+            +D+ +C ++S+ +E+ +   
Subjt:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--

Query:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ
           W+ D      QK+RI +L+ +N RL+  IS +K  LR  ++E +++ KS +MLNSGT++L+ IL +G   S++ G+GF     +   +S+  FVPA 
Subjt:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ

Query:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI
         S  ++  ++  E      I++  R   C++CG++ + + +    + DN     +N V  V  +KA + + S L +  ++ +  DDI C+
Subjt:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI

KAA0054869.1 hypothetical protein E6C27_scaffold406G00880 [Cucumis melo var. makuwa]1.5e-3155.36Show/hide
Query:  DNASADINCVSEVIKAFIAASSSLLNDYFENMLKDDIACIDVSAGVASENWPCDFGLFKKLIIDSVLVGKIFVSYNDQDDDVCEDTSVLNACANVSIVEK
        D+   ++  V  V K FI AS S L+DY+EN+LKD I   DVS   ASENWPCDFGLFKKLI+DS+LVGK  VS N QDDDVC D  VLN  ANVS VEK
Subjt:  DNASADINCVSEVIKAFIAASSSLLNDYFENMLKDDIACIDVSAGVASENWPCDFGLFKKLIIDSVLVGKIFVSYNDQDDDVCEDTSVLNACANVSIVEK

Query:  DDVDFVINKIVLDLSMSNIGSKGIKKVNISHIPTNGHVDAENVVRKRINAKKVIVDLSLKIVLNIVLS
        DDV                              T GHVD + VVRKRINAKKV+V LS KIVLNI LS
Subjt:  DDVDFVINKIVLDLSMSNIGSKGIKKVNISHIPTNGHVDAENVVRKRINAKKVIVDLSLKIVLNIVLS

TYK00141.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.6e-2330Show/hide
Query:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--
        +K  D + +R   CRECGG GHYQ+ECP F R+Q+K    TLS+++   S +    + A      +E+            +D+ +C ++S+ +E+ +   
Subjt:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--

Query:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ
           W+ D      QK+RI +L+ +N RL+  IS +K  LR  ++E +++ KS +MLNSGT++L+ IL +G   S + G+GF     +   +S+  FVPA 
Subjt:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ

Query:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI
         S  ++  ++  E      I++  R   C++CG++ + + +    + DN     +N V  V  +KA + + S L +  ++ +  DDI C+
Subjt:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI

TrEMBL top hitse value%identityAlignment
A0A5A7TPF7 Gag-proteinase polyprotein1.1e-2736.13Show/hide
Query:  NSKPYDRKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNE
        N +  D  RK     R   CREC G GHYQ+ECP FLRRQ+K   ATLS+ D+    E ++ + A           E  SG   E    I C       E
Subjt:  NSKPYDRKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNE

Query:  MKVNWEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPA
        ++V W+ D      QK+RI +L+ +N RL+  IS +K  L+  + E ++  KS +MLNSGT++L+ ILNSG+   N+ G+GFD     ++ +++  FVPA
Subjt:  MKVNWEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPA

Query:  QHSHMLDQMSVSK--EPTSYPVIRNQTRKWVCHFCGKE
          +   D +  +K   P++      +T KW+CH+CG++
Subjt:  QHSHMLDQMSVSK--EPTSYPVIRNQTRKWVCHFCGKE

A0A5A7UDB5 Gag-pol polyprotein5.6e-2430Show/hide
Query:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--
        +K  D + +R   CRECGG GHYQ+ECP F R+Q+K    TLS+++   S +    + A      +E+            +D+ +C ++S+ +E+ +   
Subjt:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--

Query:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ
           W+ D      QK+RI +L+ +N RL+  IS +K  LR  ++E +++ KS +MLNSGT++L+ IL +G   S++ G+GF     +   +S+  FVPA 
Subjt:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ

Query:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI
         S  ++  ++  E      I++  R   C++CG++ + + +    + DN     +N V  V  +KA + + S L +  ++ +  DDI C+
Subjt:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI

A0A5A7UN22 Uncharacterized protein7.2e-3255.36Show/hide
Query:  DNASADINCVSEVIKAFIAASSSLLNDYFENMLKDDIACIDVSAGVASENWPCDFGLFKKLIIDSVLVGKIFVSYNDQDDDVCEDTSVLNACANVSIVEK
        D+   ++  V  V K FI AS S L+DY+EN+LKD I   DVS   ASENWPCDFGLFKKLI+DS+LVGK  VS N QDDDVC D  VLN  ANVS VEK
Subjt:  DNASADINCVSEVIKAFIAASSSLLNDYFENMLKDDIACIDVSAGVASENWPCDFGLFKKLIIDSVLVGKIFVSYNDQDDDVCEDTSVLNACANVSIVEK

Query:  DDVDFVINKIVLDLSMSNIGSKGIKKVNISHIPTNGHVDAENVVRKRINAKKVIVDLSLKIVLNIVLS
        DDV                              T GHVD + VVRKRINAKKV+V LS KIVLNI LS
Subjt:  DDVDFVINKIVLDLSMSNIGSKGIKKVNISHIPTNGHVDAENVVRKRINAKKVIVDLSLKIVLNIVLS

A0A5D3BJZ7 Gag-pol polyprotein1.2e-2330Show/hide
Query:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--
        +K  D + +R   CRECGG GHYQ+ECP F R+Q+K    TLS+++   S +    + A      +E+            +D+ +C ++S+ +E+ +   
Subjt:  RKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVN--

Query:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ
           W+ D      QK+RI +L+ +N RL+  IS +K  LR  ++E +++ KS +MLNSGT++L+ IL +G   S + G+GF     +   +S+  FVPA 
Subjt:  ---WEADIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQ

Query:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI
         S  ++  ++  E      I++  R   C++CG++ + + +    + DN     +N V  V  +KA + + S L +  ++ +  DDI C+
Subjt:  HSHMLDQMSVSKEPTSYPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASAD-INCVSEV--IKAFIAASSSLLNDYFENMLKDDIACI

A0A5D3DMG4 Uncharacterized protein2.8e-2336.95Show/hide
Query:  RNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVNWEADIMVLDQQ
        R++ CREC G GHYQ ECPNF RRQ+K  + TLSN D+  S E  +  +A ++   ++  E+      +E ED           ++K+ W+ D  V   Q
Subjt:  RNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVNWEADIMVLDQQ

Query:  KQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQHSHMLDQMSVSKEP
        K++I  L+ +N RLL  IS +K+ LR  ++E ++  KS + LNS T++L+ ILNSG+++SN  G+GF+      S++++  FV A  S   DQ   +K  
Subjt:  KQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQHSHMLDQMSVSKEP

Query:  TSY
         +Y
Subjt:  TSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGAAGAACTCCAAACCTTATGATAGAAAAAGAAAAGACAATCAGCGATATAGAAACGTTATATGTAGAGAATGTGGTGGTTGTGGACATTATCAATCTGAATGTCC
TAACTTTTTAAGACGACAAAGAAAAGGATTAACTGCAACACTATCTAATGATGATTCTGCGTCAAGTCATGAGTCAGAAGATGAGGTTCGAGCTTTGGTTGCTCATCATA
TAGAAGAAAGTCATGAGGAAATTGTTAGCGGAAAGGTTGATGAGATTGAAGACAATATTCAATGCATGTTACAGTCACAACTTAATGAGATGAAAGTAAATTGGGAAGCT
GACATCATGGTTCTGGACCAACAAAAGCAAAGAATTACTGAATTAGTAGGAGATAACCTTCGGTTGTTGCAAGCCATTTCTGATATTAAGAAGGACTTGAGAGCTACTCG
AAGTGAGATTGAAAGAATGACAAAGTCAGGCAGAATGCTAAATTCTGGAACCCAGGATTTGAATGATATATTGAACTCTGGGAAAACTACTTCAAACAAACAAGGAATTG
GTTTTGATCACAAGAAAGGGACTATGTCTGAATCATCTCAAACTGTGTTTGTTCCTGCTCAACATTCTCATATGTTGGACCAGATGTCTGTGAGTAAGGAGCCAACATCT
TATCCTGTCATCAGAAATCAAACAAGGAAGTGGGTGTGTCACTTTTGTGGAAAGGAAGTGAATGGCAAGTATCTTTATTTTGGCAAGGATACTGATAATGCTTCTGCTGA
CATCAATTGTGTTTCTGAGGTTATTAAAGCTTTTATTGCTGCTTCATCTAGCCTGTTGAATGATTATTTTGAGAATATGTTAAAGGATGACATTGCTTGTATTGATGTGT
CTGCTGGTGTTGCTTCTGAAAATTGGCCTTGTGATTTTGGGTTGTTTAAGAAGTTGATTATTGATAGTGTTCTGGTTGGTAAAATTTTTGTGAGTTATAATGATCAAGAT
GATGATGTGTGTGAAGATACTTCAGTGTTGAATGCTTGTGCCAATGTATCAATTGTGGAAAAGGATGATGTTGATTTTGTTATCAATAAAATTGTTTTGGATTTGAGCAT
GAGCAATATAGGTTCTAAGGGGATTAAGAAGGTTAATATATCTCATATCCCAACTAATGGTCATGTTGATGCTGAGAATGTTGTTAGAAAAAGGATTAATGCTAAAAAAG
TGATTGTTGATCTATCTCTGAAAATTGTTTTAAATATTGTTCTTTCATAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGAAGAACTCCAAACCTTATGATAGAAAAAGAAAAGACAATCAGCGATATAGAAACGTTATATGTAGAGAATGTGGTGGTTGTGGACATTATCAATCTGAATGTCC
TAACTTTTTAAGACGACAAAGAAAAGGATTAACTGCAACACTATCTAATGATGATTCTGCGTCAAGTCATGAGTCAGAAGATGAGGTTCGAGCTTTGGTTGCTCATCATA
TAGAAGAAAGTCATGAGGAAATTGTTAGCGGAAAGGTTGATGAGATTGAAGACAATATTCAATGCATGTTACAGTCACAACTTAATGAGATGAAAGTAAATTGGGAAGCT
GACATCATGGTTCTGGACCAACAAAAGCAAAGAATTACTGAATTAGTAGGAGATAACCTTCGGTTGTTGCAAGCCATTTCTGATATTAAGAAGGACTTGAGAGCTACTCG
AAGTGAGATTGAAAGAATGACAAAGTCAGGCAGAATGCTAAATTCTGGAACCCAGGATTTGAATGATATATTGAACTCTGGGAAAACTACTTCAAACAAACAAGGAATTG
GTTTTGATCACAAGAAAGGGACTATGTCTGAATCATCTCAAACTGTGTTTGTTCCTGCTCAACATTCTCATATGTTGGACCAGATGTCTGTGAGTAAGGAGCCAACATCT
TATCCTGTCATCAGAAATCAAACAAGGAAGTGGGTGTGTCACTTTTGTGGAAAGGAAGTGAATGGCAAGTATCTTTATTTTGGCAAGGATACTGATAATGCTTCTGCTGA
CATCAATTGTGTTTCTGAGGTTATTAAAGCTTTTATTGCTGCTTCATCTAGCCTGTTGAATGATTATTTTGAGAATATGTTAAAGGATGACATTGCTTGTATTGATGTGT
CTGCTGGTGTTGCTTCTGAAAATTGGCCTTGTGATTTTGGGTTGTTTAAGAAGTTGATTATTGATAGTGTTCTGGTTGGTAAAATTTTTGTGAGTTATAATGATCAAGAT
GATGATGTGTGTGAAGATACTTCAGTGTTGAATGCTTGTGCCAATGTATCAATTGTGGAAAAGGATGATGTTGATTTTGTTATCAATAAAATTGTTTTGGATTTGAGCAT
GAGCAATATAGGTTCTAAGGGGATTAAGAAGGTTAATATATCTCATATCCCAACTAATGGTCATGTTGATGCTGAGAATGTTGTTAGAAAAAGGATTAATGCTAAAAAAG
TGATTGTTGATCTATCTCTGAAAATTGTTTTAAATATTGTTCTTTCATAG
Protein sequenceShow/hide protein sequence
MLKNSKPYDRKRKDNQRYRNVICRECGGCGHYQSECPNFLRRQRKGLTATLSNDDSASSHESEDEVRALVAHHIEESHEEIVSGKVDEIEDNIQCMLQSQLNEMKVNWEA
DIMVLDQQKQRITELVGDNLRLLQAISDIKKDLRATRSEIERMTKSGRMLNSGTQDLNDILNSGKTTSNKQGIGFDHKKGTMSESSQTVFVPAQHSHMLDQMSVSKEPTS
YPVIRNQTRKWVCHFCGKEVNGKYLYFGKDTDNASADINCVSEVIKAFIAASSSLLNDYFENMLKDDIACIDVSAGVASENWPCDFGLFKKLIIDSVLVGKIFVSYNDQD
DDVCEDTSVLNACANVSIVEKDDVDFVINKIVLDLSMSNIGSKGIKKVNISHIPTNGHVDAENVVRKRINAKKVIVDLSLKIVLNIVLS