CuGenDBv2

Gene ID	PI0012261
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr06:20362200..20362583
RNA-Seq Expression	PI0012261
Synteny	PI0012261
Gene Ontology terms	GO:0044237 - cellular metabolic process (biological process) GO:0044238 - primary metabolic process (biological process) GO:0071704 - organic substance metabolic process (biological process) GO:0016740 - transferase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0040138.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

4.5e-32

53.97

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIE+F G  DF LW+K+IQ IL+ Q ALK ++DPK+LP T+    KQ++EE  Y  L+LNIT+NVLRQVI+E+T +++  +L ALY +KD+P+K
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +++RE+ FS KMN +K L+ENLDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

KAA0051442.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

2.6e-35

59.52

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIEKF GN DF LW+K+I  IL  QKALK LEDPK LP TL   +++ +EEVAY TL++NIT+NVLRQVI+E+TA   W +L++LY +KD+PNK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +F++E+ FS K N  K LDENLDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

KAA0060284.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]

1.2e-32

57.94

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIEKF GN DF L +K+I  IL  QKALK LEDPK L  TL   +++ +EEVAY TL++NITENVLRQ+I+E+TA   W +L++LY +KD+PNK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +F+R++ FS KMN  K LDE LDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

TYK27723.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

3.5e-32

57.94

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIEKF GN DF L +K+I   L  QKALK LEDPK LP TL   +++ +EEVAY TL++NIT+NVLRQVI+E+T    W  L++LY +KD+ NK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +F+RE+ FS KMN  K LDENLDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

XP_038902453.1 uncharacterized protein LOC120089100 [Benincasa hispida]

4.0e-36

59.52

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        MAV +YEIEKFTGN DF LW  +IQ  L +QKAL+ +EDPK+ P  +  E+KQN+EEVAY  L+LNI+ +VLRQVI E+T ++VW +L+ LY++KDVPNK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
         ++RE+ FS KMNA K+LD NLD+ K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TAZ3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.2e-32

53.97

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIE+F G  DF LW+K+IQ IL+ Q ALK ++DPK+LP T+    KQ++EE  Y  L+LNIT+NVLRQVI+E+T +++  +L ALY +KD+P+K
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +++RE+ FS KMN +K L+ENLDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

A0A5A7U6R2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.2e-35

59.52

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIEKF GN DF LW+K+I  IL  QKALK LEDPK LP TL   +++ +EEVAY TL++NIT+NVLRQVI+E+TA   W +L++LY +KD+PNK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +F++E+ FS K N  K LDENLDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

A0A5A7UZ07 Retrotransposon protein, putative, Ty1-copia subclass

5.8e-33

57.94

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIEKF GN DF L +K+I  IL  QKALK LEDPK L  TL   +++ +EEVAY TL++NITENVLRQ+I+E+TA   W +L++LY +KD+PNK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +F+R++ FS KMN  K LDE LDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

A0A5C7GPM1 Uncharacterized protein

1.2e-30

52.46

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Query:  KYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNKIFLR
        K+EI+KF G  DF +W +K++ +L+ QK LK +E P  LP++L  EQK ++ E+A RT++LN+++NVLR+V DE+TA+ VWN+L++LY+ K + NKI+L+
Subjt:  KYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNKIFLR

Query:  ERFFSLKMNAAKALDENLDELK
        ER FS KM+A+K LD+NLDE K
Subjt:  ERFFSLKMNAAKALDENLDELK

A0A5D3DVM0 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.7e-32

57.94

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M   K+EIEKF GN DF L +K+I   L  QKALK LEDPK LP TL   +++ +EEVAY TL++NIT+NVLRQVI+E+T    W  L++LY +KD+ NK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMNAAKALDENLDELK
        +F+RE+ FS KMN  K LDENLDE K
Subjt:  IFLRERFFSLKMNAAKALDENLDELK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

4.2e-04

25.78

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Query:  KYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNKIFLR
        K  I+ F G   + +W  +I+ +L  Q  LK ++    L    + +  +  E  A  T++  ++++ L     + TA  +   L A+Y RK + +++ LR
Subjt:  KYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNKIFLR

Query:  ERFFSLKMNAAKAL-------DENLDEL
        +R  SLK+++  +L       DE + EL
Subjt:  ERFFSLKMNAAKAL-------DENLDEL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.8e-16

33.63

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Query:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK
        M+  KYE+ KF G+N F+ W ++++ +L  Q   K L+     P+T+ AE   +++E A   + L+++++V+  +IDE TA  +W RL++LY+ K + NK
Subjt:  MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNK

Query:  IFLRERFFSLKMN
        ++L+++ ++L M+
Subjt:  IFLRERFFSLKMN

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGCAGTAGAAAAGTATGAAATTGAAAAGTTTACAGGAAATAATGATTTTAATCTATGGTCAAAGAAAATTCAGTTGATTTTGACCTACCAAAAGGCTTTGAAAGGATT
AGAAGATCCAAAATCTTTACCAGAAACTCTTATAGCAGAACAAAAACAGAATATAGAAGAAGTAGCCTATAGAACTCTGTTATTGAATATAACAGAAAATGTTTTGAGGC
AAGTGATAGATGAATCTACAGCTCATGACGTATGGAATCGATTACAAGCTTTATATGTAAGGAAAGATGTTCCTAACAAGATTTTTCTGAGGGAAAGATTTTTCTCGTTG
AAGATGAATGCTGCAAAAGCATTGGATGAGAACCTAGACGAATTAAAAGATTGA

mRNA sequence

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Protein sequence

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MAVEKYEIEKFTGNNDFNLWSKKIQLILTYQKALKGLEDPKSLPETLIAEQKQNIEEVAYRTLLLNITENVLRQVIDESTAHDVWNRLQALYVRKDVPNKIFLRERFFSL
KMNAAKALDENLDELKD

PI0012261 (gene) of Melon (PI 482460) v1 genome