CuGenDBv2

Gene ID	PI0012275
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Pol protein
Genome location	chr08:5091791..5092030
RNA-Seq Expression	PI0012275
Synteny	PI0012275
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0004519 - endonuclease activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR016197 - Chromo-like domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0037901.1 pol protein [Cucumis melo var. makuwa]

6.3e-32

87.34

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

KAA0040695.1 pol protein [Cucumis melo var. makuwa]

6.3e-32

87.34

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

KAA0043066.1 pol protein [Cucumis melo var. makuwa]

4.8e-32

88.61

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

KAA0059750.1 pol protein [Cucumis melo var. makuwa]

6.3e-32

86.08

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSYVE P+EVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR+RYP+LFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

KAA0068212.1 pol protein [Cucumis melo var. makuwa]

1.3e-32

88.61

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI+LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T8G8 Reverse transcriptase

3.0e-32

87.34

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

A0A5A7TGS7 Reverse transcriptase

3.0e-32

87.34

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

A0A5A7TGX4 Reverse transcriptase

3.0e-32

87.34

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSY E PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

A0A5A7TM23 Pol protein

2.3e-32

88.61

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI LVKVLWRNHR+EEATWER+DDMR RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

A0A5A7VIQ0 Pol protein

6.1e-33

88.61

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Query:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG
        MLRKYV DPSHV+DYEPLEIDENLSYVE PVEVLA+EVKTLRN+EI+LVKVLWRNHR+EEATWER+DDMR+RYPELFEG
Subjt:  MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGTTGAGGAAATACGTGGCTGACCCATCTCATGTTTTGGATTATGAACCTTTGGAGATTGATGAGAATTTGAGCTACGTGGAGCACCCAGTTGAGGTTTTGGCCAAGGA
AGTAAAGACGCTTCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCGGATGGAAGAAGCCACATGGGAGCGGAAGGATGACATGAGAGCTCGTTACC
CGGAGTTGTTCGAGGGTTAG

mRNA sequence

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Protein sequence

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MLRKYVADPSHVLDYEPLEIDENLSYVEHPVEVLAKEVKTLRNREIALVKVLWRNHRMEEATWERKDDMRARYPELFEG

PI0012275 (gene) of Melon (PI 482460) v1 genome