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PI0012276 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012276
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionpentatricopeptide repeat-containing protein At4g02750-like
Genome locationchr01:26966770..26967061
RNA-Seq ExpressionPI0012276
SyntenyPI0012276
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593380.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia]8.2e-1488.64Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MKNK VAKEPG SWIQI+C V YFLTKDDSHDEIEEIHSCLKVL
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

KAG7025727.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-1488.64Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MKNK VAKEPG SWIQI+C V YFLTKDDSHDEIEEIHSCLKVL
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

KGN45242.1 hypothetical protein Csa_015822 [Cucumis sativus]1.1e-2364.95Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIE------------EIHSCLKVLQILCSVMWKN-KNKMSFGTIVRSLSLLMGSCTHQTRYRFKS
        MK+KGVAKEPGVSWIQ+KC V YFLTKDD HD+IE              H  L  +QILCS+MWK  KNK+SF TIVRSL LLMGSCTHQTR + KS
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIE------------EIHSCLKVLQILCSVMWKN-KNKMSFGTIVRSLSLLMGSCTHQTRYRFKS

XP_022960219.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita moschata]1.1e-1386.36Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MKNK VAKEPG SWIQI+C + YFLTKDDSHDEIEEIHSCLKVL
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

XP_023515085.1 pentatricopeptide repeat-containing protein At4g02750-like [Cucurbita pepo subsp. pepo]1.1e-1386.36Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MKNK VAKEPG SWIQI+C + YFLTKDDSHDEIEEIHSCLKVL
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

TrEMBL top hitse value%identityAlignment
A0A0A0KA26 Uncharacterized protein5.5e-2464.95Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIE------------EIHSCLKVLQILCSVMWKN-KNKMSFGTIVRSLSLLMGSCTHQTRYRFKS
        MK+KGVAKEPGVSWIQ+KC V YFLTKDD HD+IE              H  L  +QILCS+MWK  KNK+SF TIVRSL LLMGSCTHQTR + KS
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIE------------EIHSCLKVLQILCSVMWKN-KNKMSFGTIVRSLSLLMGSCTHQTRYRFKS

A0A2N9IF76 DYW_deaminase domain-containing protein5.2e-0661.36Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MK++GV KEPG+SWIQIK  + YFL  D++H+EI EIH  LK L
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

A0A6J1D5R5 pentatricopeptide repeat-containing protein At4g02750-like3.1e-1179.55Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        M NKGV KEPG+SWIQIK  V +FLTKDDSHDEI EIHSCLK L
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

A0A6J1HAB1 pentatricopeptide repeat-containing protein At4g02750-like5.2e-1486.36Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MKNK VAKEPG SWIQI+C + YFLTKDDSHDEIEEIHSCLKVL
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

A0A6J1KVF3 pentatricopeptide repeat-containing protein At4g02750-like2.6e-1381.82Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        MKNK VAKEPG SWIQI+C + YF+TKDDSHDEI+EIHSCLKVL
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

SwissProt top hitse value%identityAlignment
O64766 Pentatricopeptide repeat-containing protein At2g35030, mitochondrial6.1e-0438.98Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMS
        MK KG+ K+PG SW+++      F+  D SH + E + S   +L  L + M KNKN  S
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMS

Q9FK93 Pentatricopeptide repeat-containing protein At5g396807.2e-0550Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLK
        M N+GV KEPGVSWI I+     FL +D+ H EI  I++ +K
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLK

Q9SIT7 Pentatricopeptide repeat-containing protein At2g136005.5e-0545.45Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        M+ +GV K+PG SWI+I+     F+ KD SH   ++IHS L +L
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

Q9SVA5 Pentatricopeptide repeat-containing protein At4g395306.1e-0447.83Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQI
        MK +GV KEPG SWI I   V  FL+KD SH +  +I+  L  L +
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQI

Q9SVP7 Pentatricopeptide repeat-containing protein At4g136502.7e-0450Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIH
        MK KGV KEPG SWI++K  +  F   D +H   +EIH
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIH

Arabidopsis top hitse value%identityAlignment
AT2G13600.1 Pentatricopeptide repeat (PPR) superfamily protein3.9e-0645.45Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL
        M+ +GV K+PG SWI+I+     F+ KD SH   ++IHS L +L
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVL

AT2G35030.1 Pentatricopeptide repeat (PPR) superfamily protein4.3e-0538.98Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMS
        MK KG+ K+PG SW+++      F+  D SH + E + S   +L  L + M KNKN  S
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMS

AT4G13650.1 Pentatricopeptide repeat (PPR) superfamily protein2.0e-0550Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIH
        MK KGV KEPG SWI++K  +  F   D +H   +EIH
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIH

AT4G39530.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.3e-0547.83Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQI
        MK +GV KEPG SWI I   V  FL+KD SH +  +I+  L  L +
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQI

AT5G39680.1 Pentatricopeptide repeat (PPR) superfamily protein5.1e-0650Show/hide
Query:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLK
        M N+GV KEPGVSWI I+     FL +D+ H EI  I++ +K
Subjt:  MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAAACAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATCAAGTGCTGGGTACGCTATTTTCTTACCAAGGACGATTCTCACGACGAGATTGAAGAAAT
TCATTCGTGCTTGAAGGTGTTACAAATTTTATGCTCCGTGATGTGGAAGAACAAAAACAAAATGAGCTTCGGAACCATAGTGAGAAGCTTGTCGTTGCTTATGGGATCTT
GCACACACCAAACAAGATACCGATTCAAATCATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAAACAAGGGAGTTGCAAAAGAACCAGGAGTCAGTTGGATTCAGATCAAGTGCTGGGTACGCTATTTTCTTACCAAGGACGATTCTCACGACGAGATTGAAGAAAT
TCATTCGTGCTTGAAGGTGTTACAAATTTTATGCTCCGTGATGTGGAAGAACAAAAACAAAATGAGCTTCGGAACCATAGTGAGAAGCTTGTCGTTGCTTATGGGATCTT
GCACACACCAAACAAGATACCGATTCAAATCATGA
Protein sequenceShow/hide protein sequence
MKNKGVAKEPGVSWIQIKCWVRYFLTKDDSHDEIEEIHSCLKVLQILCSVMWKNKNKMSFGTIVRSLSLLMGSCTHQTRYRFKS