; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012280 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012280
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr07:14964207..14966868
RNA-Seq ExpressionPI0012280
SyntenyPI0012280
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33754.1 retrotransposon protein [Cucumis melo subsp. melo]5.5e-7134.01Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---
        MDRRTFAILCHLLR V GL+STE+VDVEEMV MFLHVLAHDVKNRV+Q+EFVRSGET+SR+FNIVL+ V+RL++ELIK+P PV +NC D RW+CFEN   
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---

Query:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQRRRVNP
                                             G FV      EG  A                                      Y  QR  +  
Subjt:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQRRRVNP

Query:  RGMSGGVGIHGGVEIEQRHIPTR------------------------------------LLGN------DYANDVGKAPKGTST----------------
           +     +       +H   R                                    LL N       Y NDV    +G ST                
Subjt:  RGMSGGVGIHGGVEIEQRHIPTR------------------------------------LLGN------DYANDVGKAPKGTST----------------

Query:  ---------------------------------------------------------------------IDCRIKTLKCTFQAISEMQDPNCSGFGWNDE
                                                                             IDCRIKTLK TFQAI+EM  P CSGFGWNDE
Subjt:  ---------------------------------------------------------------------IDCRIKTLKCTFQAISEMQDPNCSGFGWNDE

Query:  VKCIIAEKDLFDNWVKS-PNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSG
         KCI+AEK+LFDNWV+S P +K             TYVFG+DRA G+ AETFADVGSN PGG  +       N D   +Y++G  +  DDV  SR  R+ 
Subjt:  VKCIIAEKDLFDNWVKS-PNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSG

Query:  EGRPSSSGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNN
        EG+  SSGSKRKRG      +E I  A++  N+QL+ IAEWP     ++   R      L+ +P L+ +D+A   + L   + D++ F+ +P +
Subjt:  EGRPSSSGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNN

ADN34114.1 retrotransposon protein [Cucumis melo subsp. melo]7.6e-7334.24Show/hide
Query:  TVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN-----------------
        T+ GL STEVVDVEEMV MFLH+LAHDVK+RV++REF+RSGETISR+FN+VL+ V+RLH+EL+KKPQPVPN CTD RWR FEN                 
Subjt:  TVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN-----------------

Query:  -----------------------GKFV------EGPQA--------------------------------------YVDQR-------------------
                               G FV      EG  A                                      Y  QR                   
Subjt:  -----------------------GKFV------EGPQA--------------------------------------YVDQR-------------------

Query:  --------RRVNPRGMSGGVG-------------------------IHGGV--------------EIEQRHIPTRL------------------LGNDYA
                R V  R      G                         +H  +              E++  H  T                    L  +  
Subjt:  --------RRVNPRGMSGGVG-------------------------IHGGV--------------EIEQRHIPTRL------------------LGNDYA

Query:  NDVGKAPKGT----------------------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCII
            + PK T                                                    STID RIK +K  F A++EM+ PNCSGFGWNDE KCI+
Subjt:  NDVGKAPKGT----------------------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCII

Query:  AEKDLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSS
        AEK++FD+W   P +K    ++       +YVFGKDRA G RAE+FAD+GSN P G+     D + + D   MY+ G  MSPDD++ +R  R  E R  S
Subjt:  AEKDLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSS

Query:  SGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK
        SGSKRKR GH  ++ +I+R+A+EYGN+QL  IAEWP   R+D   TR  +V  L+AIP L+ +D+ R M+IL RNV DMK+FL++P++ K
Subjt:  SGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.1e-6738.24Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---
        MDRR FAILCHLLRT   L  TEV+DVEEMV MFLH+LAHD+KNR++QREFVRSGET+SR+FN+VL+ V+RLH+EL+KKPQ V N+C DPRW+ FEN   
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---

Query:  ---GKFVEGPQAYVDQRRRVNPRG-------------------MSG-------------GVGIHGGVEI------------------------EQRHI--
             +++   +  D+ R    +G                   +SG              +  H G+++                        E+ H+  
Subjt:  ---GKFVEGPQAYVDQRRRVNPRG-------------------MSG-------------GVGIHGGVEI------------------------EQRHI--

Query:  -------PTRL-----LGNDYANDVGKAP-----------KGTS----TIDCRIKTLKCTFQAI-------SEMQDPNCSGFG-----WNDEVKCIIAEK
               PT       + +  A +V K             +G S     + CR   + C    +       SE+ D    G         DE+  I A  
Subjt:  -------PTRL-----LGNDYANDVGKAP-----------KGTS----TIDCRIKTLKCTFQAI-------SEMQDPNCSGFG-----WNDEVKCIIAEK

Query:  DLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGF-GEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSG
          +  W      K    ++        YVFGKDRA   R+ETFADVGSNVP  F G+   DD  + DI  MY+QG  MSPD++   R  ++ E +  SSG
Subjt:  DLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGF-GEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSG

Query:  SKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL
        SKRK+G  + E +E+I+SA+E+GNDQLKAIA WPKE R  E   RA V+ QLQ IP L   D+A+ +QIL R+V  ++ FL IP   KL
Subjt:  SKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL

KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-8839.68Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---
        MDRR FAILCHLLRT+ GL STEVVDVEEMV MFLH+LAHDVKNRV+QREF+RSGETISR+FN+VL+ V+RLHDEL+KKPQPVPN CTD RWR FEN   
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---

Query:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQR-----
                                             G FV      EG  A                                      Y  QR     
Subjt:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQR-----

Query:  ----------------------RRVNPRG---MSGGVGIHGG-----VEIEQRHIPT-----RLLGNDYAN-----------DVGKAPKGT---------
                              R V  R    + G   I  G     VE++   I        L+  +  N              + PK T         
Subjt:  ----------------------RRVNPRG---MSGGVGIHGG-----VEIEQRHIPT-----RLLGNDYAN-----------DVGKAPKGT---------

Query:  ---------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKSPNSKRSAEQAV
                                               STID RIK +K  F A++EM+ PNCSGFGWNDE KCI+AEK++FD+W   P +K    ++ 
Subjt:  ---------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKSPNSKRSAEQAV

Query:  SILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEALEIIRSAME
              +YVFGKDRA G RAE+FAD+GSN P G+  F  D V + D S MY+ G  MSPDD++ +R  R  E R  SSGSKRKR GH  ++ +I+R+A+E
Subjt:  SILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEALEIIRSAME

Query:  YGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK
        YGN+QL  IAEWP   R+D   TR  +V QL+AIP L+ +D+ R M+IL RNV DMK+FL++P+N K
Subjt:  YGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-6433.62Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFE----
        MDRR FAILCHLLRT  GL  TEV+DVEEMV MFLH+LAH VKNR++QREFVRSGET+SR+FNIVL+   RLHDEL+KKPQPV N+CTDPRW+ FE    
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFE----

Query:  ----NGKFVEGPQAYVDQRRRVNPRG--------------------------------MSGGVGIHGGVEI------------------------EQRHI
            NG +++   +  D+ R    +G                                +   +  H G+++                        E+ H+
Subjt:  ----NGKFVEGPQAYVDQRRRVNPRG--------------------------------MSGGVGIHGGVEI------------------------EQRHI

Query:  ---------PT-----------------------------------------------------RLLGNDYAN-------DVGKAPKGTSTID-------
                 PT                                                      L+  +  N       D G +   T+  D       
Subjt:  ---------PT-----------------------------------------------------RLLGNDYAN-------DVGKAPKGTSTID-------

Query:  -------------------------C----RIKTLKCTFQAI---------------------SEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKS-PNS
                                 C     I  LK   Q +                      EM+ P+CSGFGWN+E +CIIAE+DLFD+WVKS P +
Subjt:  -------------------------C----RIKTLKCTFQAI---------------------SEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKS-PNS

Query:  KRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVG-DDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEA
        K    ++       +YVFGKDRA G R+ETF DVGSNVP  F + +   D  + DI  MY+QG  +SPD++   R                         
Subjt:  KRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVG-DDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEA

Query:  LEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL
         E+IRS ME+GN+QLKAIA+W KE R  E   RA VV QLQ IP L    + + MQIL R++  +  FL IP   KL
Subjt:  LEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL

TrEMBL top hitse value%identityAlignment
A0A5A7SQU2 Putative nuclease HARBI11.0e-6738.24Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---
        MDRR FAILCHLLRT   L  TEV+DVEEMV MFLH+LAHD+KNR++QREFVRSGET+SR+FN+VL+ V+RLH+EL+KKPQ V N+C DPRW+ FEN   
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---

Query:  ---GKFVEGPQAYVDQRRRVNPRG-------------------MSG-------------GVGIHGGVEI------------------------EQRHI--
             +++   +  D+ R    +G                   +SG              +  H G+++                        E+ H+  
Subjt:  ---GKFVEGPQAYVDQRRRVNPRG-------------------MSG-------------GVGIHGGVEI------------------------EQRHI--

Query:  -------PTRL-----LGNDYANDVGKAP-----------KGTS----TIDCRIKTLKCTFQAI-------SEMQDPNCSGFG-----WNDEVKCIIAEK
               PT       + +  A +V K             +G S     + CR   + C    +       SE+ D    G         DE+  I A  
Subjt:  -------PTRL-----LGNDYANDVGKAP-----------KGTS----TIDCRIKTLKCTFQAI-------SEMQDPNCSGFG-----WNDEVKCIIAEK

Query:  DLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGF-GEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSG
          +  W      K    ++        YVFGKDRA   R+ETFADVGSNVP  F G+   DD  + DI  MY+QG  MSPD++   R  ++ E +  SSG
Subjt:  DLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGF-GEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSG

Query:  SKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL
        SKRK+G  + E +E+I+SA+E+GNDQLKAIA WPKE R  E   RA V+ QLQ IP L   D+A+ +QIL R+V  ++ FL IP   KL
Subjt:  SKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL

A0A5A7SWD8 Retrotransposon protein8.2e-8939.68Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---
        MDRR FAILCHLLRT+ GL STEVVDVEEMV MFLH+LAHDVKNRV+QREF+RSGETISR+FN+VL+ V+RLHDEL+KKPQPVPN CTD RWR FEN   
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---

Query:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQR-----
                                             G FV      EG  A                                      Y  QR     
Subjt:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQR-----

Query:  ----------------------RRVNPRG---MSGGVGIHGG-----VEIEQRHIPT-----RLLGNDYAN-----------DVGKAPKGT---------
                              R V  R    + G   I  G     VE++   I        L+  +  N              + PK T         
Subjt:  ----------------------RRVNPRG---MSGGVGIHGG-----VEIEQRHIPT-----RLLGNDYAN-----------DVGKAPKGT---------

Query:  ---------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKSPNSKRSAEQAV
                                               STID RIK +K  F A++EM+ PNCSGFGWNDE KCI+AEK++FD+W   P +K    ++ 
Subjt:  ---------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKSPNSKRSAEQAV

Query:  SILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEALEIIRSAME
              +YVFGKDRA G RAE+FAD+GSN P G+  F  D V + D S MY+ G  MSPDD++ +R  R  E R  SSGSKRKR GH  ++ +I+R+A+E
Subjt:  SILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEALEIIRSAME

Query:  YGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK
        YGN+QL  IAEWP   R+D   TR  +V QL+AIP L+ +D+ R M+IL RNV DMK+FL++P+N K
Subjt:  YGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK

A0A5D3DG22 Retrotransposon protein1.4e-6433.62Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFE----
        MDRR FAILCHLLRT  GL  TEV+DVEEMV MFLH+LAH VKNR++QREFVRSGET+SR+FNIVL+   RLHDEL+KKPQPV N+CTDPRW+ FE    
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFE----

Query:  ----NGKFVEGPQAYVDQRRRVNPRG--------------------------------MSGGVGIHGGVEI------------------------EQRHI
            NG +++   +  D+ R    +G                                +   +  H G+++                        E+ H+
Subjt:  ----NGKFVEGPQAYVDQRRRVNPRG--------------------------------MSGGVGIHGGVEI------------------------EQRHI

Query:  ---------PT-----------------------------------------------------RLLGNDYAN-------DVGKAPKGTSTID-------
                 PT                                                      L+  +  N       D G +   T+  D       
Subjt:  ---------PT-----------------------------------------------------RLLGNDYAN-------DVGKAPKGTSTID-------

Query:  -------------------------C----RIKTLKCTFQAI---------------------SEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKS-PNS
                                 C     I  LK   Q +                      EM+ P+CSGFGWN+E +CIIAE+DLFD+WVKS P +
Subjt:  -------------------------C----RIKTLKCTFQAI---------------------SEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKS-PNS

Query:  KRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVG-DDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEA
        K    ++       +YVFGKDRA G R+ETF DVGSNVP  F + +   D  + DI  MY+QG  +SPD++   R                         
Subjt:  KRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVG-DDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEA

Query:  LEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL
         E+IRS ME+GN+QLKAIA+W KE R  E   RA VV QLQ IP L    + + MQIL R++  +  FL IP   KL
Subjt:  LEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKL

E5GBB2 Retrotransposon protein2.6e-7134.01Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---
        MDRRTFAILCHLLR V GL+STE+VDVEEMV MFLHVLAHDVKNRV+Q+EFVRSGET+SR+FNIVL+ V+RL++ELIK+P PV +NC D RW+CFEN   
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN---

Query:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQRRRVNP
                                             G FV      EG  A                                      Y  QR  +  
Subjt:  -------------------------------------GKFV------EGPQA--------------------------------------YVDQRRRVNP

Query:  RGMSGGVGIHGGVEIEQRHIPTR------------------------------------LLGN------DYANDVGKAPKGTST----------------
           +     +       +H   R                                    LL N       Y NDV    +G ST                
Subjt:  RGMSGGVGIHGGVEIEQRHIPTR------------------------------------LLGN------DYANDVGKAPKGTST----------------

Query:  ---------------------------------------------------------------------IDCRIKTLKCTFQAISEMQDPNCSGFGWNDE
                                                                             IDCRIKTLK TFQAI+EM  P CSGFGWNDE
Subjt:  ---------------------------------------------------------------------IDCRIKTLKCTFQAISEMQDPNCSGFGWNDE

Query:  VKCIIAEKDLFDNWVKS-PNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSG
         KCI+AEK+LFDNWV+S P +K             TYVFG+DRA G+ AETFADVGSN PGG  +       N D   +Y++G  +  DDV  SR  R+ 
Subjt:  VKCIIAEKDLFDNWVKS-PNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSG

Query:  EGRPSSSGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNN
        EG+  SSGSKRKRG      +E I  A++  N+QL+ IAEWP     ++   R      L+ +P L+ +D+A   + L   + D++ F+ +P +
Subjt:  EGRPSSSGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNN

E5GCB5 Retrotransposon protein3.7e-7334.24Show/hide
Query:  TVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN-----------------
        T+ GL STEVVDVEEMV MFLH+LAHDVK+RV++REF+RSGETISR+FN+VL+ V+RLH+EL+KKPQPVPN CTD RWR FEN                 
Subjt:  TVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFEN-----------------

Query:  -----------------------GKFV------EGPQA--------------------------------------YVDQR-------------------
                               G FV      EG  A                                      Y  QR                   
Subjt:  -----------------------GKFV------EGPQA--------------------------------------YVDQR-------------------

Query:  --------RRVNPRGMSGGVG-------------------------IHGGV--------------EIEQRHIPTRL------------------LGNDYA
                R V  R      G                         +H  +              E++  H  T                    L  +  
Subjt:  --------RRVNPRGMSGGVG-------------------------IHGGV--------------EIEQRHIPTRL------------------LGNDYA

Query:  NDVGKAPKGT----------------------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCII
            + PK T                                                    STID RIK +K  F A++EM+ PNCSGFGWNDE KCI+
Subjt:  NDVGKAPKGT----------------------------------------------------STIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCII

Query:  AEKDLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSS
        AEK++FD+W   P +K    ++       +YVFGKDRA G RAE+FAD+GSN P G+     D + + D   MY+ G  MSPDD++ +R  R  E R  S
Subjt:  AEKDLFDNWVKSPNSKRSAEQAVSILRRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSS

Query:  SGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK
        SGSKRKR GH  ++ +I+R+A+EYGN+QL  IAEWP   R+D   TR  +V  L+AIP L+ +D+ R M+IL RNV DMK+FL++P++ K
Subjt:  SGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWPKEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.1e-0837.08Show/hide
Query:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTD
        MD+  F  LC LL+T   L  T  + +E  + +FL ++ H+++ R VQ  F  SGETISR+FN VL  V+ +  +  +     PN+ +D
Subjt:  MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGGCGAACATTTGCCATTCTGTGCCACTTGCTTAGGACGGTTGTTGGGTTAGCCTCGACCGAAGTCGTGGACGTTGAGGAGATGGTGACGATGTTCCTTCACGT
CCTAGCACACGATGTGAAGAACCGAGTGGTCCAGCGGGAGTTCGTGCGATCCGGTGAGACAATTTCAAGGTATTTCAACATTGTGTTGATGGTCGTCGTACGTCTTCACG
ATGAGCTGATAAAAAAACCACAACCGGTACCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAATGGCAAGTTCGTTGAGGGCCCCCAAGCATACGTAGACCAG
AGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGGTGGAAATCGAACAACGGCACATTCCGACCCGGTTACTTGGCAATGATTATGCGAA
TGATGTCGGAAAAGCTCCCAAGGGGACTTCGACTATTGACTGTCGGATCAAGACACTCAAGTGCACCTTTCAAGCCATATCGGAGATGCAGGACCCTAACTGCAGTGGAT
TCGGCTGGAATGACGAGGTCAAATGCATAATTGCGGAGAAGGACCTCTTCGACAATTGGGTGAAGTCACCCAACAGCAAAAGGTCTGCTGAACAAGCCGTTTCCATACTA
CGACGAACTACGTATGTGTTCGGGAAAGACCGTGCTATTGGACAACGCGCGGAGACGTTCGCAGATGTCGGTTCTAATGTGCCTGGTGGTTTCGGGGAGTTCGTTGGGGA
CGATGTTTCAAATATGGACATCTCATGCATGTACAACCAAGGACATCCCATGTCACCAGATGACGTAGTCGTCTCACGTCTGGAACGATCGGGTGAGGGTAGGCCGAGTT
CCAGCGGTTCAAAAAGGAAGCGGGGGGGCCATAATGCAGAAGCTCTAGAGATCATTCGCAGCGCCATGGAATATGGGAATGACCAGCTTAAGGCAATTGCAGAATGGCCG
AAGGAAGCACGGGAAGACGAATACACAACCCGTGCAACAGTCGTGGCACAATTGCAGGCCATCCCTGGACTATCAAGAATCGACAAGGCACGCTGTATGCAGATACTCAC
GCGAAACGTAGTTGATATGAAATCGTTTTTGCAAATACCTAACAACTTTAAGCTCACTACTGCACGATCATTCTCCAAGACAATGCGTGACCCTGAACCAATTGGCTGCC
TAACTACAATATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGGCGAACATTTGCCATTCTGTGCCACTTGCTTAGGACGGTTGTTGGGTTAGCCTCGACCGAAGTCGTGGACGTTGAGGAGATGGTGACGATGTTCCTTCACGT
CCTAGCACACGATGTGAAGAACCGAGTGGTCCAGCGGGAGTTCGTGCGATCCGGTGAGACAATTTCAAGGTATTTCAACATTGTGTTGATGGTCGTCGTACGTCTTCACG
ATGAGCTGATAAAAAAACCACAACCGGTACCGAACAACTGCACAGATCCCCGTTGGCGTTGTTTCGAGAATGGCAAGTTCGTTGAGGGCCCCCAAGCATACGTAGACCAG
AGAAGAAGAGTCAACCCTCGTGGAATGTCTGGTGGAGTTGGTATCCATGGGGGGGTGGAAATCGAACAACGGCACATTCCGACCCGGTTACTTGGCAATGATTATGCGAA
TGATGTCGGAAAAGCTCCCAAGGGGACTTCGACTATTGACTGTCGGATCAAGACACTCAAGTGCACCTTTCAAGCCATATCGGAGATGCAGGACCCTAACTGCAGTGGAT
TCGGCTGGAATGACGAGGTCAAATGCATAATTGCGGAGAAGGACCTCTTCGACAATTGGGTGAAGTCACCCAACAGCAAAAGGTCTGCTGAACAAGCCGTTTCCATACTA
CGACGAACTACGTATGTGTTCGGGAAAGACCGTGCTATTGGACAACGCGCGGAGACGTTCGCAGATGTCGGTTCTAATGTGCCTGGTGGTTTCGGGGAGTTCGTTGGGGA
CGATGTTTCAAATATGGACATCTCATGCATGTACAACCAAGGACATCCCATGTCACCAGATGACGTAGTCGTCTCACGTCTGGAACGATCGGGTGAGGGTAGGCCGAGTT
CCAGCGGTTCAAAAAGGAAGCGGGGGGGCCATAATGCAGAAGCTCTAGAGATCATTCGCAGCGCCATGGAATATGGGAATGACCAGCTTAAGGCAATTGCAGAATGGCCG
AAGGAAGCACGGGAAGACGAATACACAACCCGTGCAACAGTCGTGGCACAATTGCAGGCCATCCCTGGACTATCAAGAATCGACAAGGCACGCTGTATGCAGATACTCAC
GCGAAACGTAGTTGATATGAAATCGTTTTTGCAAATACCTAACAACTTTAAGCTCACTACTGCACGATCATTCTCCAAGACAATGCGTGACCCTGAACCAATTGGCTGCC
TAACTACAATATGA
Protein sequenceShow/hide protein sequence
MDRRTFAILCHLLRTVVGLASTEVVDVEEMVTMFLHVLAHDVKNRVVQREFVRSGETISRYFNIVLMVVVRLHDELIKKPQPVPNNCTDPRWRCFENGKFVEGPQAYVDQ
RRRVNPRGMSGGVGIHGGVEIEQRHIPTRLLGNDYANDVGKAPKGTSTIDCRIKTLKCTFQAISEMQDPNCSGFGWNDEVKCIIAEKDLFDNWVKSPNSKRSAEQAVSIL
RRTTYVFGKDRAIGQRAETFADVGSNVPGGFGEFVGDDVSNMDISCMYNQGHPMSPDDVVVSRLERSGEGRPSSSGSKRKRGGHNAEALEIIRSAMEYGNDQLKAIAEWP
KEAREDEYTTRATVVAQLQAIPGLSRIDKARCMQILTRNVVDMKSFLQIPNNFKLTTARSFSKTMRDPEPIGCLTTI