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PI0012291 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012291
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:7718821..7719075
RNA-Seq ExpressionPI0012291
SyntenyPI0012291
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2979.52Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEAN+ T +K+ + GSSSKT+VGPSQ+K KGKGKTPKN KGKKV KGKCYHCN+ GHWLRNCPKYLAEKKAEKEAQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]5.0e-2775.9Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEANV TT+K+ ++GSSSKT+VGPSQ+K K KGK PKN KGKKV KGKCYHCN++ HWL+NC KYLAEKKAEKEAQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]5.5e-2672.62Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN
        M   K++E+NV  T+K+ ++GSSSKT+VGPS MKNK KGKTP N KGK V KGKCYHCN++GHWLRNCPKYLAEKKAEKEAQ N
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN

TYK06687.1 gag/pol protein [Cucumis melo var. makuwa]4.2e-2674.7Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEAN+ TT+K+ + GS SKT+VGPS MK K KG+T KN KGKKV KGKCYHCN+NGHWLRNCPK LAEKKAEK+AQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]6.3e-3079.52Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEAN+ TT+K+ + GSSSKT+VGPSQ+K KGKGKTPKN KGKKV KGKCYHCN++GHWLRNCP+YLAEKKAEKEAQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein6.7e-3079.52Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEAN+ T +K+ + GSSSKT+VGPSQ+K KGKGKTPKN KGKKV KGKCYHCN+ GHWLRNCPKYLAEKKAEKEAQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

A0A5A7TUI5 Gag/pol protein2.4e-2775.9Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEANV TT+K+ ++GSSSKT+VGPSQ+K K KGK PKN KGKKV KGKCYHCN++ HWL+NC KYLAEKKAEKEAQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

A0A5A7TXW7 Gag/pol protein2.7e-2672.62Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN
        M   K++E+NV  T+K+ ++GSSSKT+VGPS MKNK KGKTP N KGK V KGKCYHCN++GHWLRNCPKYLAEKKAEKEAQ N
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN

A0A5D3C4B0 Gag/pol protein2.0e-2674.7Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEAN+ TT+K+ + GS SKT+VGPS MK K KG+T KN KGKKV KGKCYHCN+NGHWLRNCPK LAEKKAEK+AQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

A0A5D3E1U5 Gag/pol protein3.0e-3079.52Show/hide
Query:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG
        MG GK+VEAN+ TT+K+ + GSSSKT+VGPSQ+K KGKGKTPKN KGKKV KGKCYHCN++GHWLRNCP+YLAEKKAEKEAQG
Subjt:  MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATGGGGAAGCAAGTGGAAGCAAATGTTGATACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAAGG
AAAGGGAAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGTGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGGAATTGCCCGAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTATGGGGAAGCAAGTGGAAGCAAATGTTGATACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAAGG
AAAGGGAAAGACTCCCAAGAATGGTAAGGGAAAGAAAGTTGTGAAAGGTAAATGTTACCATTGCAACCAAAACGGGCATTGGTTAAGGAATTGCCCGAAGTACCTTGCTG
AGAAGAAAGCTGAGAAGGAAGCACAAGGAAACTAG
Protein sequenceShow/hide protein sequence
MGMGKQVEANVDTTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKNGKGKKVVKGKCYHCNQNGHWLRNCPKYLAEKKAEKEAQGN