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PI0012320 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012320
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:5339924..5346442
RNA-Seq ExpressionPI0012320
SyntenyPI0012320
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN33993.1 retrotransposon gag protein [Cucumis melo subsp. melo]8.3e-6470.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N S S+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.1e-6369.06Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP + E+K  S P  L  +N+ KEE +E N S  +SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

KAA0065554.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.4e-6369.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP LRWGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEEN+E N S S+ K
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

XP_008465649.1 PREDICTED: uncharacterized protein LOC103503291, partial [Cucumis melo]6.4e-6469.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N+SSS+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]1.2e-6269.06Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MT LLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDPHGNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT  ISK++GKGKL AQPDHANVS ISLRS KIL+TP + E+KV S P  L  +N+ KEE  E N S S+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

TrEMBL top hitse value%identityAlignment
A0A1S3CQU8 uncharacterized protein LOC1035032913.1e-6469.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+G+PNDKCP ++E+ N++R+YDPHGNTYN GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         +MKQQM+QLT  ISK++GKGKLPAQPDH NVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N+SSS+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

A0A5A7VE49 Retrotransposon gag protein2.6e-6369.61Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDK P+++E+ N++R+YDPHGNTYN+GWRDNP LRWGND Q+  QA S+S+NQG+NLED++KALA NT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKLPAQP+HANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEEN+E N S S+ K
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

A0A5A7VQ60 Retrotransposon gag protein5.8e-6360.89Show/hide
Query:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQN
        TTLLTSFVQG  +KV KCGVCGL+GH N+KCP+++E+ N++R+YDPH NTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ 
Subjt:  TTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQN

Query:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSKAKTS--------------SS
        EMKQQM+QLT AISK++GKGKLPAQ DHANVSAISLRSGKIL+TP + E+KV S P  L  +N+ KEE +E N S S+SK   S               S
Subjt:  EMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSKAKTS--------------SS

Query:  R--PKEKKYKLEGKMVIFPKAFKNL
        R  PK+K+   E +++ F K   NL
Subjt:  R--PKEKKYKLEGKMVIFPKAFKNL

A0A5D3CRR8 Retrotransposon gag protein2.0e-6369.06Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDPHGNTYN+GWRDNPNLRWGND Q+  QA S+S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKL AQ ++ANVSA+SLRSGKIL+TP + E+K  S P  L  +N+ KEE +E N S  +SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

E5GBZ4 Retrotransposon gag protein4.0e-6470.17Show/hide
Query:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ
        MTTLLTSFVQG  +KV KCGVC L+GHPNDKCP+++E+ N++RKYDP+GNTYN+GWRDNPNLRWGND Q+  QA  +S+NQG+NLED++KALATNT+SFQ
Subjt:  MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQ

Query:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK
         EMKQQM+QLT AISK++GKGKLPAQPD+ANVSAISLRSGKIL+TP + E+KV S    L  +N+ KEE +E N S S+SK
Subjt:  NEMKQQMSQLTNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPS-EEKVPSIPTLLVDENKKKEENLENNASSSSSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTG
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCC
AAGCGAAGAAAAGGTACCATCTATCCCTACCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGCTAAAACAA
GCTCATCGCGGCCAAAAGAGAAGAAATACAAACTCGAGGGTAAAATGGTAATTTTCCCGAAAGCATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCT
CATTGCAGACTGCCTACTTCGCGAGGCAAGTGCTTCACAACTAGAGCTCTGCGAGATACTTCATCTGCAGAAGTACACATCATCCTTGCCGCACAACGCAAACGTTCAAT
CGCCAACTCACCGAATCAAATTCAAAGTTCAAACGCATGCAATCTTCATCAGCTCGCGGAACGCATCATCTCACTTGTTCAGCTCACAACCTTCAGTTCGCCTAAAAACG
GTTACTTTAACCGTCAAGCCCAAGCCCACGGCCCAAGCCCAATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTACATTGCTCACTTCTTTTGTACAAGGTGGAAATGTGAAAGTTGCAAAATGTGGAGTTTGTGGTCTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGA
AGAGGCAAATGTCATTAGGAAGTACGATCCTCATGGAAACACTTACAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACGCCCAACGACCCGCACAAG
CAACTTCATCCTCAAATAATCAAGGTAGTAATTTGGAAGATTTGGTAAAAGCTCTTGCTACCAATACAATTTCTTTCCAAAATGAAATGAAGCAACAAATGTCCCAATTG
ACCAATGCAATAAGCAAACTAGAAGGTAAAGGCAAGCTTCCAGCTCAGCCCGATCACGCAAATGTAAGTGCCATCTCGCTTAGAAGCGGTAAAATTCTGGAAACCCCTCC
AAGCGAAGAAAAGGTACCATCTATCCCTACCCTTCTAGTAGATGAAAATAAGAAAAAGGAAGAAAATTTAGAAAACAATGCCTCTTCTTCTTCTTCAAAAGCTAAAACAA
GCTCATCGCGGCCAAAAGAGAAGAAATACAAACTCGAGGGTAAAATGGTAATTTTCCCGAAAGCATTCAAAAACCTTCTTCGCGGCAAAACTACTTCAGAACGCGTAGCT
CATTGCAGACTGCCTACTTCGCGAGGCAAGTGCTTCACAACTAGAGCTCTGCGAGATACTTCATCTGCAGAAGTACACATCATCCTTGCCGCACAACGCAAACGTTCAAT
CGCCAACTCACCGAATCAAATTCAAAGTTCAAACGCATGCAATCTTCATCAGCTCGCGGAACGCATCATCTCACTTGTTCAGCTCACAACCTTCAGTTCGCCTAAAAACG
GTTACTTTAACCGTCAAGCCCAAGCCCACGGCCCAAGCCCAATGTAA
Protein sequenceShow/hide protein sequence
MTTLLTSFVQGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPHGNTYNAGWRDNPNLRWGNDAQRPAQATSSSNNQGSNLEDLVKALATNTISFQNEMKQQMSQL
TNAISKLEGKGKLPAQPDHANVSAISLRSGKILETPPSEEKVPSIPTLLVDENKKKEENLENNASSSSSKAKTSSSRPKEKKYKLEGKMVIFPKAFKNLLRGKTTSERVA
HCRLPTSRGKCFTTRALRDTSSAEVHIILAAQRKRSIANSPNQIQSSNACNLHQLAERIISLVQLTTFSSPKNGYFNRQAQAHGPSPM