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PI0012323 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012323
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposable element Tf2
Genome locationchr04:13230395..13230802
RNA-Seq ExpressionPI0012323
SyntenyPI0012323
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025901.1 hypothetical protein E6C27_scaffold34G001890 [Cucumis melo var. makuwa]2.2e-3276.53Show/hide
Query:  DKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQLM
        +KY+FQHATIKH+KEWF ENGYLQDIDQ KNVKFLN+KSKLLA LAQ TTDADFQRLL T VNA ++SKS SS +QED E  +PEY+LD+PFLDSQ M
Subjt:  DKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQLM

KAA0034823.1 hypothetical protein E6C27_scaffold213G00570 [Cucumis melo var. makuwa]3.4e-3882.57Show/hide
Query:  MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLD
        ML KNLKIK W+KYNFQHATIKH+KEWFAEN YLQDIDQRKNV+FLNDKSKLL ALAQ TTDADFQRLLSTAVNA S+SKS SSSIQED E  +PEY+LD
Subjt:  MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLD

Query:  DPFLDSQLM
        D  LDSQ M
Subjt:  DPFLDSQLM

KAA0059031.1 polyprotein [Cucumis melo var. makuwa]3.5e-3085.33Show/hide
Query:  FSTTSYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADF
        ++T SYPQYK+L+KNLKIKWW KYNFQHATIKH+KEWFA+NGYLQDIDQRKN++FLNDKSKLLAALAQ TTDADF
Subjt:  FSTTSYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADF

TYJ98361.1 hypothetical protein E5676_scaffold232G00950 [Cucumis melo var. makuwa]1.6e-1972.5Show/hide
Query:  FAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQ
        + +NG LQDIDQRKN KFLNDK K LAAL Q T DADFQRLLSTAVN  S+SK A S IQED E  + EY+LDDPFLDSQ
Subjt:  FAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQ

XP_031739746.1 uncharacterized protein LOC116403279 [Cucumis sativus]3.4e-1773.91Show/hide
Query:  VKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLST
        VK + +K + K   +HATIKHMKEWFAEN YLQDIDQRKN++FLNDKSKLLA LAQ TTD +FQRLLST
Subjt:  VKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLST

TrEMBL top hitse value%identityAlignment
A0A0A0KYU0 Uncharacterized protein1.6e-1773.91Show/hide
Query:  VKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLST
        VK + +K + K   +HATIKHMKEWFAEN YLQDIDQRKN++FLNDKSKLLA LAQ TTD +FQRLLST
Subjt:  VKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLST

A0A5A7SNT5 Uncharacterized protein1.0e-3276.53Show/hide
Query:  DKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQLM
        +KY+FQHATIKH+KEWF ENGYLQDIDQ KNVKFLN+KSKLLA LAQ TTDADFQRLL T VNA ++SKS SS +QED E  +PEY+LD+PFLDSQ M
Subjt:  DKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQLM

A0A5A7SWC0 Uncharacterized protein1.7e-3882.57Show/hide
Query:  MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLD
        ML KNLKIK W+KYNFQHATIKH+KEWFAEN YLQDIDQRKNV+FLNDKSKLL ALAQ TTDADFQRLLSTAVNA S+SKS SSSIQED E  +PEY+LD
Subjt:  MLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLD

Query:  DPFLDSQLM
        D  LDSQ M
Subjt:  DPFLDSQLM

A0A5A7UZX0 Polyprotein1.7e-3085.33Show/hide
Query:  FSTTSYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADF
        ++T SYPQYK+L+KNLKIKWW KYNFQHATIKH+KEWFA+NGYLQDIDQRKN++FLNDKSKLLAALAQ TTDADF
Subjt:  FSTTSYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADF

A0A5D3BI61 Uncharacterized protein7.8e-2072.5Show/hide
Query:  FAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQ
        + +NG LQDIDQRKN KFLNDK K LAAL Q T DADFQRLLSTAVN  S+SK A S IQED E  + EY+LDDPFLDSQ
Subjt:  FAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASSSIQEDGELANPEYNLDDPFLDSQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTTTGTCTCTATTTCCAAATTCTATGGATATTTTGTTGGAGCTTCAGCACAACATCTTATCCTCAATATAAAATGCTTGTAAAAAATCTTAAAATTAAATGGTG
GGACAAATATAATTTCCAGCATGCCACCATCAAACATATGAAGGAATGGTTTGCAGAGAATGGATATCTTCAAGATATTGATCAGAGAAAGAACGTAAAGTTTTTAAATG
ATAAGTCTAAACTTCTTGCAGCACTAGCACAGACAACAACTGATGCAGACTTTCAAAGGCTATTATCAACTGCAGTAAATGCTCCTTCAAACTCCAAATCAGCATCCTCT
TCCATACAGGAAGATGGAGAATTAGCAAATCCAGAATATAATTTGGATGACCCATTTCTTGATTCACAACTAATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTTTGTCTCTATTTCCAAATTCTATGGATATTTTGTTGGAGCTTCAGCACAACATCTTATCCTCAATATAAAATGCTTGTAAAAAATCTTAAAATTAAATGGTG
GGACAAATATAATTTCCAGCATGCCACCATCAAACATATGAAGGAATGGTTTGCAGAGAATGGATATCTTCAAGATATTGATCAGAGAAAGAACGTAAAGTTTTTAAATG
ATAAGTCTAAACTTCTTGCAGCACTAGCACAGACAACAACTGATGCAGACTTTCAAAGGCTATTATCAACTGCAGTAAATGCTCCTTCAAACTCCAAATCAGCATCCTCT
TCCATACAGGAAGATGGAGAATTAGCAAATCCAGAATATAATTTGGATGACCCATTTCTTGATTCACAACTAATGTGA
Protein sequenceShow/hide protein sequence
MRFCLYFQILWIFCWSFSTTSYPQYKMLVKNLKIKWWDKYNFQHATIKHMKEWFAENGYLQDIDQRKNVKFLNDKSKLLAALAQTTTDADFQRLLSTAVNAPSNSKSASS
SIQEDGELANPEYNLDDPFLDSQLM