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PI0012334 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012334
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr07:16017731..16018219
RNA-Seq ExpressionPI0012334
SyntenyPI0012334
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041132.1 hypothetical protein E6C27_scaffold128G00450 [Cucumis melo var. makuwa]4.1e-5472.22Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AV+TT  SGSLL QFQV SSL+ +I+RRQLE   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EIV YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

KAA0050493.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

KAA0050527.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

KAA0053246.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]4.5e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

KAA0059912.1 reverse transcriptase [Cucumis melo var. makuwa]4.5e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

TrEMBL top hitse value%identityAlignment
A0A5A7T1Y5 Reverse transcriptase2.2e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

A0A5A7TCD9 Reverse transcriptase2.0e-5472.22Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AV+TT  SGSLL QFQV SSL+ +I+RRQLE   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EIV YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

A0A5A7U2V7 Reverse transcriptase2.2e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

A0A5D3BHI1 Reverse transcriptase2.2e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

A0A5D3BS67 Reverse transcriptase2.2e-5371.6Show/hide
Query:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM
        +EYH    NVVADALS KSRL KSALCG  VALL EL+ S+AVVTT  SGSLL QFQV SSL+ +I+RRQ E   LQK   KSK+  E EFELR D AI+
Subjt:  MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIM

Query:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC
        K GRLCVP+I+ELK+ ILEEAHSSAYAMH GSTKMYR LKKTYWWS MK+EI  YVDRCLIC
Subjt:  KNGRLCVPSINELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATACCATCTAGATAACACAAATGTTGTAGCAGATGCTTTGAGTACGAAGTCGAGACTTGTGAAGAGTGCATTGTGTGGTACTCCAGTAGCCTTGTTGAGAGAGCT
AAAGAGTTCACGAGCAGTTGTGACCACAAATACTTCAGGGAGCTTGTTAGTTCAGTTTCAGGTTGGGTCTTCTCTAATGGCAAAGATTATGAGAAGACAGTTAGAAGGCA
TTCAACTTCAGAAGCTGCTTGGGAAGTCCAAACAAAGCCAAGAAACAGAGTTTGAATTGAGAGCAGACAGAGCCATAATGAAGAATGGGAGGCTATGTGTTCCGAGTATT
AATGAGCTTAAGGATGTTATTCTAGAGGAAGCTCACAGTTCAGCTTATGCTATGCATCTAGGTAGCACCAAGATGTACAGAGCTTTGAAGAAGACTTACTGGTGGTCTAG
TATGAAACGAGAGATAGTTGCATATGTTGATAGATGTTTGATCTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATACCATCTAGATAACACAAATGTTGTAGCAGATGCTTTGAGTACGAAGTCGAGACTTGTGAAGAGTGCATTGTGTGGTACTCCAGTAGCCTTGTTGAGAGAGCT
AAAGAGTTCACGAGCAGTTGTGACCACAAATACTTCAGGGAGCTTGTTAGTTCAGTTTCAGGTTGGGTCTTCTCTAATGGCAAAGATTATGAGAAGACAGTTAGAAGGCA
TTCAACTTCAGAAGCTGCTTGGGAAGTCCAAACAAAGCCAAGAAACAGAGTTTGAATTGAGAGCAGACAGAGCCATAATGAAGAATGGGAGGCTATGTGTTCCGAGTATT
AATGAGCTTAAGGATGTTATTCTAGAGGAAGCTCACAGTTCAGCTTATGCTATGCATCTAGGTAGCACCAAGATGTACAGAGCTTTGAAGAAGACTTACTGGTGGTCTAG
TATGAAACGAGAGATAGTTGCATATGTTGATAGATGTTTGATCTGTTAA
Protein sequenceShow/hide protein sequence
MEYHLDNTNVVADALSTKSRLVKSALCGTPVALLRELKSSRAVVTTNTSGSLLVQFQVGSSLMAKIMRRQLEGIQLQKLLGKSKQSQETEFELRADRAIMKNGRLCVPSI
NELKDVILEEAHSSAYAMHLGSTKMYRALKKTYWWSSMKREIVAYVDRCLIC