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PI0012383 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012383
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:15296208..15296746
RNA-Seq ExpressionPI0012383
SyntenyPI0012383
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035413.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-4561.07Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        M GPTCS FGWNDE KCI+AEK++FD+WVKSHP AKGLLNK FPHYD+L YVFG+DRAT GRAE+F D+G N P G+E FA     D +   M SQGL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPD++M  R+ ++SE R  SSGSKRK   QA ++ +++R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

KAA0048374.1 retrotransposon protein [Cucumis melo var. makuwa]1.6e-4761.07Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MRGPTCSGFGWNDE KCI+AEK++FD WV+SHPAAKGLLNK FPHYD+L YVF +D AT GRAE+F DVGSN P G++ FA    +D +   M S+GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPD++M  R+ R+SE R  SSGSK+K G   +++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

KAA0050782.1 retrotransposon protein [Cucumis melo var. makuwa]5.1e-4662.42Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MR P CSGFGWNDE KCIIAEK++FD WVKSHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F D+GSN P G++ FA     D + P M S GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPDD+M  R+ R+SE R  SSGSK K    A ++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

TYK05082.1 retrotransposon protein [Cucumis melo var. makuwa]2.1e-4763.09Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MRGP CSGFGWNDE KCI+ EK+LFD WVKSHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F D+GSN PPG++  A     D + P M S GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPDD+M  R+ R+SE R  SSGSKRK    A ++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

XP_031744343.1 uncharacterized protein LOC116404989 [Cucumis sativus]5.1e-4661.33Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MRGP+C GFGWND++KCI+AEK+LFD+WV+SHPAAKGLLNK FP+YD+L YVFG+DRA    AETF DVGSNVPPGFE F   D ND+E P+M S   +M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQLK
        S DDI  P   R +++R  SSGSKR+ G Q LE A++I+ AM    D+L+
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQLK

TrEMBL top hitse value%identityAlignment
A0A5A7SXX8 Retrotransposon protein1.2e-4561.07Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        M GPTCS FGWNDE KCI+AEK++FD+WVKSHP AKGLLNK FPHYD+L YVFG+DRAT GRAE+F D+G N P G+E FA     D +   M SQGL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPD++M  R+ ++SE R  SSGSKRK   QA ++ +++R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

A0A5A7TZA5 Retrotransposon protein7.6e-4861.07Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MRGPTCSGFGWNDE KCI+AEK++FD WV+SHPAAKGLLNK FPHYD+L YVF +D AT GRAE+F DVGSN P G++ FA    +D +   M S+GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPD++M  R+ R+SE R  SSGSK+K G   +++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

A0A5A7U4M2 Retrotransposon protein2.4e-4662.42Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MR P CSGFGWNDE KCIIAEK++FD WVKSHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F D+GSN P G++ FA     D + P M S GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPDD+M  R+ R+SE R  SSGSK K    A ++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

A0A5D3C1M0 Retrotransposon protein9.9e-4863.09Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MRGP CSGFGWNDE KCI+ EK+LFD WVKSHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F D+GSN PPG++  A     D + P M S GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPDD+M  R+ R+SE R  SSGSKRK    A ++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

A0A5D3DPR5 Retrotransposon protein1.6e-4561.74Show/hide
Query:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM
        MRGP CSGFGWNDE KCI+AEK++FD W  SHPAAKGLLNK F HYD+L YVFG+DRAT GRAE+F D+GSN PPG++  A     D + P M S GL+M
Subjt:  MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDM

Query:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL
        SPDD+M  R+ R+SE R  SSGSKRK    A ++ +I+R+A+EY N+QL
Subjt:  SPDDIMTPRSVRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein3.0e-0436.96Show/hide
Query:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVF
        GF W++    I A+  ++DS++K HP A+    K  P Y+DL  +F
Subjt:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVF

AT2G24960.2 unknown protein6.4e-0732Show/hide
Query:  SGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRD
        +GF W+     +IA+ D++++++++HP A+    K  P Y +LC++FG++
Subjt:  SGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRD

AT4G02210.1 unknown protein1.6e-0533.33Show/hide
Query:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAE
        GF W+D  + ++A+  ++D ++K HP ++    K  P Y DLC V+  D  +  +AE
Subjt:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAE

AT4G02210.2 unknown protein1.6e-0533.33Show/hide
Query:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAE
        GF W+D  + ++A+  ++D ++K HP ++    K  P Y DLC V+  D  +  +AE
Subjt:  GFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGG
CCTCCTAAACAAATTCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAAGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGC
CTCCAGGCTTCGAAGGATTTGCCCAGTACGACGGGAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCG
GTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAAGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCCAATGA
CCAACTTAAGGCCAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTGAAATGCATCATTGCCGAGAAAGACTTGTTCGACAGTTGGGTGAAGAGTCATCCAGCCGCAAAGGG
CCTCCTAAACAAATTCTTTCCCCACTACGACGACCTCTGCTACGTGTTCGGAAGAGATCGTGCAACAAGAGGTCGAGCTGAAACCTTCGGTGATGTTGGGTCGAACGTGC
CTCCAGGCTTCGAAGGATTTGCCCAGTACGACGGGAACGATGTGGAGAACCCGACGATGTGCAGTCAGGGCCTAGACATGTCACCTGACGACATAATGACTCCAAGATCG
GTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACATGGAAGGCAGGCATTGGAGGCGGCTGAAATTATTCGCAGTGCCATGGAATATGCCAATGA
CCAACTTAAGGCCAAATGA
Protein sequenceShow/hide protein sequence
MRGPTCSGFGWNDELKCIIAEKDLFDSWVKSHPAAKGLLNKFFPHYDDLCYVFGRDRATRGRAETFGDVGSNVPPGFEGFAQYDGNDVENPTMCSQGLDMSPDDIMTPRS
VRMSEARPGSSGSKRKHGRQALEAAEIIRSAMEYANDQLKAK