CuGenDBv2

Gene ID	PI0012385
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr05:8050790..8051176
RNA-Seq Expression	PI0012385
Synteny	PI0012385
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

4.0e-44

79.82

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M FA G LPV YLG+PLL+GRLR++DCAPLIQRITS+IRSW+ARVLSFAGRLQLVRSVLRS QV+WASVFVLPA VH+ VD +L SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEG
        VAWVDVC P EE G
Subjt:  VAWVDVCRPLEEEG

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

8.9e-44

78.26

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M F  G LP+ YLG+PLL+GRLR++D APLIQRITSRIRSW+ARVLSFAGRLQLVR VLRS QV+WASVFVLPA VHH VD +L+SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEGL
        VAWVDVC P EE GL
Subjt:  VAWVDVCRPLEEEGL

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]

1.7e-42

78.26

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M F  G L V YLG+PLL+GRLR++D APLIQRITSRIRSW+ARVLSFAGRLQLV SVLRSFQV+WASVFVLPA VH+ VD +L SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEGL
        VAWVDVC P EE GL
Subjt:  VAWVDVCRPLEEEGL

KAA0062333.1 putative reverse transcriptase [Cucumis melo var. makuwa]

1.5e-43

79.13

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M F LG LPV YLG+PLLSGRLR+SDCAPLIQRITSRIRSW ARV SFAGRLQL+R VLRS QVFWASVFVLPA VH+ VD +L SYLWR KE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEGL
        VAWV+VC P EE GL
Subjt:  VAWVDVCRPLEEEGL

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

4.0e-44

79.82

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M FA G LPV YLG+PLL+GRLR++DCAPLIQRITS+IRSW+ARVLSFAGRLQLVRSVLRS QV+WASVFVLPA VH+ VD +L SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEG
        VAWVDVC P EE G
Subjt:  VAWVDVCRPLEEEG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPE5 Reverse transcriptase domain-containing protein

1.9e-44

79.82

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M FA G LPV YLG+PLL+GRLR++DCAPLIQRITS+IRSW+ARVLSFAGRLQLVRSVLRS QV+WASVFVLPA VH+ VD +L SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEG
        VAWVDVC P EE G
Subjt:  VAWVDVCRPLEEEG

A0A5A7UV01 F17F8.5

4.3e-44

78.26

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M F  G LP+ YLG+PLL+GRLR++D APLIQRITSRIRSW+ARVLSFAGRLQLVR VLRS QV+WASVFVLPA VHH VD +L+SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEGL
        VAWVDVC P EE GL
Subjt:  VAWVDVCRPLEEEGL

A0A5A7V2L9 Putative reverse transcriptase

7.3e-44

79.13

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M F LG LPV YLG+PLLSGRLR+SDCAPLIQRITSRIRSW ARV SFAGRLQL+R VLRS QVFWASVFVLPA VH+ VD +L SYLWR KE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEGL
        VAWV+VC P EE GL
Subjt:  VAWVDVCRPLEEEGL

A0A5A7V3Z0 Reverse transcriptase domain-containing protein

8.1e-43

78.26

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M F  G L V YLG+PLL+GRLR++D APLIQRITSRIRSW+ARVLSFAGRLQLV SVLRSFQV+WASVFVLPA VH+ VD +L SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEGL
        VAWVDVC P EE GL
Subjt:  VAWVDVCRPLEEEGL

A0A5D3DXE4 Reverse transcriptase domain-containing protein

1.9e-44

79.82

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Query:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK
        M FA G LPV YLG+PLL+GRLR++DCAPLIQRITS+IRSW+ARVLSFAGRLQLVRSVLRS QV+WASVFVLPA VH+ VD +L SYLWRGKE GRGG K
Subjt:  MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAK

Query:  VAWVDVCRPLEEEG
        VAWVDVC P EE G
Subjt:  VAWVDVCRPLEEEG

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

3.5e-11

33.66

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Query:  VPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAKVAWVDVCRPLEEEG
        +P+L  R+       +++R++SR+  W  + LSFAGRL L ++VL S  V   S  +LP  + + +D L  ++LW      +    V W  VC P +E G
Subjt:  VPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAKVAWVDVCRPLEEEG

Query:  L
        L
Subjt:  L

Arabidopsis top hits

e value

%identity

Alignment

AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

3.3e-28

52.21

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Query:  FALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAKVA
        FA G LPV YLG+PLL+ ++  SD  PL+++I  RI  W+AR LSFAGRLQL+ SV+ S   FW S F LP+     +DS+  S+LW G E+    AKVA
Subjt:  FALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAKVA

Query:  WVDVCRPLEEEGL
        W DVC P +E GL
Subjt:  WVDVCRPLEEEGL

Sequences

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CDS sequence

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ATGAGGTTTGCGCTGGGTACTTTGCCTGTTCATTACCTGGGTGTTCCCTTACTCTCTGGTCGTCTGCGTGCTTCGGATTGTGCTCCGCTCATCCAGCGTATTACTAGTCG
GATTCGGTCTTGGTCAGCTAGAGTTTTATCCTTCGCTGGTAGACTTCAGCTTGTGCGTTCGGTGTTACGGAGTTTTCAGGTCTTTTGGGCCAGTGTGTTTGTTTTGCCGG
CTGAGGTGCATCATGCAGTTGATAGTCTTTTGATGTCATATTTGTGGAGGGGAAAGGAGGTTGGGAGAGGGGGTGCAAAGGTTGCTTGGGTGGATGTGTGTCGTCCGTTA
GAGGAAGAGGGTCTAATATTCGGGAGGGAAAGTCGTGGAACAGTGTGTGTATCTTGA

mRNA sequence

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Protein sequence

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MRFALGTLPVHYLGVPLLSGRLRASDCAPLIQRITSRIRSWSARVLSFAGRLQLVRSVLRSFQVFWASVFVLPAEVHHAVDSLLMSYLWRGKEVGRGGAKVAWVDVCRPL
EEEGLIFGRESRGTVCVS

PI0012385 (gene) of Melon (PI 482460) v1 genome