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PI0012406 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012406
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 11
Genome locationchr08:12873449..12884381
RNA-Seq ExpressionPI0012406
SyntenyPI0012406
Gene Ontology termsGO:0006357 - regulation of transcription by RNA polymerase II (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0016592 - mediator complex (cellular component)
GO:0003712 - transcription coregulator activity (molecular function)
InterPro domainsIPR019404 - Mediator complex, subunit Med11


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004144648.1 mediator of RNA polymerase II transcription subunit 11 [Cucumis sativus]1.1e-5997.46Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYM+SK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTIDDYQVK+EDS
Subjt:  LDGMKQTIDDYQVKMEDS
XP_008442051.1 PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Cucumis melo]7.4e-61100Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTIDDYQVKMEDS
Subjt:  LDGMKQTIDDYQVKMEDS
XP_022927640.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita moschata]9.0e-5997.46Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTID+YQVKMEDS
Subjt:  LDGMKQTIDDYQVKMEDS
XP_023520392.1 mediator of RNA polymerase II transcription subunit 11 isoform X2 [Cucurbita pepo subsp. pepo]2.0e-5896.61Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTID+YQVKMED+
Subjt:  LDGMKQTIDDYQVKMEDS
XP_038894867.1 mediator of RNA polymerase II transcription subunit 11 [Benincasa hispida]4.5e-5896.61Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MD P QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LD MKQTID+YQVKMEDS
Subjt:  LDGMKQTIDDYQVKMEDS
TrEMBL top hitse value%identityAlignment
A0A0A0L450 Mediator of RNA polymerase II transcription subunit 113.5e-5682.14Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK
        MDPPA NTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK                      DIQVTLRDEIKSACEYRPFEK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIK----------------------DIQVTLRDEIKSACEYRPFEK

Query:  CDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
        CDYSSRITNELCCKKLEYM+SKLDGMKQTIDDYQVK+EDS
Subjt:  CDYSSRITNELCCKKLEYMISKLDGMKQTIDDYQVKMEDS
A0A1S3B5G7 Mediator of RNA polymerase II transcription subunit 113.6e-61100Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTIDDYQVKMEDS
Subjt:  LDGMKQTIDDYQVKMEDS
A0A6J1CKY4 Mediator of RNA polymerase II transcription subunit 112.8e-5895.76Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTID+YQVK+ED+
Subjt:  LDGMKQTIDDYQVKMEDS
A0A6J1EPJ1 Mediator of RNA polymerase II transcription subunit 114.4e-5997.46Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTID+YQVKMEDS
Subjt:  LDGMKQTIDDYQVKMEDS
A0A6J1I6T5 Mediator of RNA polymerase II transcription subunit 112.4e-5794.92Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRI NELCCKKLEYMI K
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDYQVKMEDS
        LDGMKQTID+YQVKMED+
Subjt:  LDGMKQTIDDYQVKMEDS
SwissProt top hitse value%identityAlignment
Q6ID77 Mediator of RNA polymerase II transcription subunit 112.0e-4574.77Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDY
        L+ +KQT D Y
Subjt:  LDGMKQTIDDY
Arabidopsis top hitse value%identityAlignment
AT3G01435.1 Expressed protein1.4e-4674.77Show/hide
Query:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK
        MDP  QNTSLQRLQNVE R+V+VLELAGGVMEELA+P+GP+KEFVN+HC EFMQ +KDIQVTLR+EIKSACEYRPFEKCDY++RI NE+C +KLEY++++
Subjt:  MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISK

Query:  LDGMKQTIDDY
        L+ +KQT D Y
Subjt:  LDGMKQTIDDY

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTTCAAAACGTGGAGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCC
TGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGTAGTGAGTTCATGCAATTCATCAAGGATATCCAAGTTACACTGCGGGATGAAATCAAAAGTGCATGTGAATATC
GTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTGCTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGAT
TATCAAGTGAAAATGGAAGATTCTTGA
mRNA sequenceShow/hide mRNA sequence
CGAAACCTTAAACCCCACATTTTCTTTTCCCTCTCCTCCTCATTTTCCCTCCTTTACCCTCACCCACCTTTTTTTTATCTTCTCCCTCTTTTCATTTTCCATATTTTTCA
TTTTCCTTTTCTTAAAAAATTACCCTCACCCACGCTCTCACAACACCCACCATCCACTGCGGCTGCCGCACATCCTGTCCGCTTGCCATCAGTCCACTCGCGTCGTTTAG
GTCCTGCTCGTCCTCGCAGGCCATCTTCTCCTCGTTTTTTGCTGAGCCAGCATAGCTCTTGATGGATCCGCCGGCCCAGAATACTTCATTGCAGCGCCTTCAAAACGTGG
AGAAGAGAATTGTGAGGGTTTTGGAGCTAGCAGGAGGAGTCATGGAAGAGCTTGCCAACCCTGCTGGTCCAAGAAAGGAATTTGTCAACAATCATTGTAGTGAGTTCATG
CAATTCATCAAGGATATCCAAGTTACACTGCGGGATGAAATCAAAAGTGCATGTGAATATCGTCCATTTGAGAAGTGTGATTATAGTTCAAGGATTACTAACGAACTTTG
CTGCAAGAAACTGGAATATATGATTTCGAAGTTGGATGGAATGAAACAAACTATTGATGATTATCAAGTGAAAATGGAAGATTCTTGAGTCGCATGTCCTAGAGATCTAT
ATCTAAGCCTACCTAAATTCAAGGTGAAGGGAAGAAGGAAATAAGGAAATAAGGAAATAAGAAACGATGTGAAGAGGGAAAGAGAGATGGACAAATGGTGTATAAACTTA
AGATGGGAACCACGGTTGTCTAATTTAGATTAGAATCTCACCTATATTTATTTTATGTATTAAGTTTGCCATGTTAGCTAGTACACATTAGTATTGACATGTCACCTAAT
TACATACTTTAGTTTGCTTTCTATTGGAGGGGGCAACAATTATGTTAGCTTAAAAGAACCCCTTGGAATTATTCCATACACTCTAGCACCAAAAAAAGACACATGAAGGT
AAACAAATAGAACTTAAAAGGCAATAAATGTATGTCGTCCATTCTAATGAATTATTTTGTATAAAGTAGAATGCTATTTTTATTTATTTTTGAATTGCTTCTAAGAATAA
AGATTATTACTATAATCTGTAAT
Protein sequenceShow/hide protein sequence
MDPPAQNTSLQRLQNVEKRIVRVLELAGGVMEELANPAGPRKEFVNNHCSEFMQFIKDIQVTLRDEIKSACEYRPFEKCDYSSRITNELCCKKLEYMISKLDGMKQTIDD
YQVKMEDS