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PI0012412 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012412
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr04:28695118..28695633
RNA-Seq ExpressionPI0012412
SyntenyPI0012412
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-6475.46Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLHDELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-6474.85Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLH+ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]1.2e-6475.46Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLHDELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]7.9e-6474.23Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLH+ELL KPQPV + C+D RW+WFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

KAA0065736.1 retrotransposon protein [Cucumis melo var. makuwa]3.5e-6474.23Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIHES LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+ RHFN++ LA++RLHDELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein5.9e-6575.46Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLHDELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

A0A5A7TXW1 Retrotransposon protein5.9e-6575.46Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLHDELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

A0A5A7U476 Retrotransposon protein3.8e-6474.23Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLH+ELL KPQPV + C+D RW+WFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

A0A5A7VHB0 Retrotransposon protein1.7e-6474.23Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIHES LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+ RHFN++ LA++RLHDELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

A0A5D3BDX0 Retrotransposon protein1.7e-6474.85Show/hide
Query:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM
        MD H ++ S++N FI SQRQLLL LELL ND KRI+ +P + RH+IRQLAYFRMIH S LVCRQSTRMDRRCF ILCH+LRT+AGL STE++DVEEMV M
Subjt:  MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTM

Query:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE
        FLH+LAHDVKNRVIQREF RSGET+SRHFN+VLLA++RLH+ELL KPQPV + C+D RWRWFE
Subjt:  FLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.4e-1038.54Show/hide
Query:  FRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKP
        +R + + A  C Q  RM   CFT LC++L+T   LQ T  I +EE V MFL +  H+   R +   F R+ ETV R F  VL A   L  + +  P
Subjt:  FRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKP

AT5G28730.1 unknown protein3.3e-0736.46Show/hide
Query:  IHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPV
        I+ + + C+   RM    FT LC IL    GLQS+  I ++E V +FL + A +   R I   F  + ET+ R F+ VL A+ RL  E + +P+ V
Subjt:  IHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPV

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.4e-1039.74Show/hide
Query:  CRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRL
        C ++ RMD+  F  LC +L+T   L+ T  I +E  + +FL ++ H+++ R +Q  F  SGET+SRHFN VL A++ +
Subjt:  CRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVKNRVIQREFERSGETVSRHFNLVLLAILRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACACACACAGCGATATTACGTCCCTACTTAACGTGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAAGAAGAGGATATCGCA
AGTACCTTCGGACATGAGGCATAAGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGCCCTCGTGTGTCGTCAAAGTACGCGAATGGATAGACGATGCTTCA
CCATCTTATGCCACATACTTCGAACTGTAGCGGGATTACAGTCGACCGAAATTATAGATGTCGAAGAAATGGTCACCATGTTTCTTCACGTACTGGCACACGACGTGAAA
AATCGTGTGATTCAACGTGAGTTTGAGCGATCCGGTGAGACTGTTTCACGTCATTTCAATCTTGTACTGCTGGCCATTTTACGACTCCACGACGAGCTTTTGGCAAAACC
CCAACCGGTGACAAGCACTTGCTCTGATGCACGGTGGAGGTGGTTCGAGGTACGATTTATCATGGTCACAGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACACACACAGCGATATTACGTCCCTACTTAACGTGTTCATAACATCCCAACGTCAGTTGCTATTGACGTTGGAATTGTTATTGAATGACAAGAAGAGGATATCGCA
AGTACCTTCGGACATGAGGCATAAGATTAGACAGTTGGCTTACTTTCGCATGATCCATGAAAGCGCCCTCGTGTGTCGTCAAAGTACGCGAATGGATAGACGATGCTTCA
CCATCTTATGCCACATACTTCGAACTGTAGCGGGATTACAGTCGACCGAAATTATAGATGTCGAAGAAATGGTCACCATGTTTCTTCACGTACTGGCACACGACGTGAAA
AATCGTGTGATTCAACGTGAGTTTGAGCGATCCGGTGAGACTGTTTCACGTCATTTCAATCTTGTACTGCTGGCCATTTTACGACTCCACGACGAGCTTTTGGCAAAACC
CCAACCGGTGACAAGCACTTGCTCTGATGCACGGTGGAGGTGGTTCGAGGTACGATTTATCATGGTCACAGTCTAA
Protein sequenceShow/hide protein sequence
MDTHSDITSLLNVFITSQRQLLLTLELLLNDKKRISQVPSDMRHKIRQLAYFRMIHESALVCRQSTRMDRRCFTILCHILRTVAGLQSTEIIDVEEMVTMFLHVLAHDVK
NRVIQREFERSGETVSRHFNLVLLAILRLHDELLAKPQPVTSTCSDARWRWFEVRFIMVTV