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PI0012419 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012419
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:17953130..17953707
RNA-Seq ExpressionPI0012419
SyntenyPI0012419
Gene Ontology termsGO:0016020 - membrane (cellular component)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031555.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5061.96Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP   ++ +   D R+K+LK+T+QAIAEMRGP+C+GFGWN+E +CI+AE++LFDNWV+SHP AKGLL+K F YYD+L+YVFGRDRATG  A+TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSN P    D   + D  +ED P +YSQ VD+S DD+  +R  R+SDGR  SSGSKRKRG Q
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]3.7e-5073.53Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        M +KL DTNIQGS   D RVKSLKK   +   MRGPSC+GFGWNE++QCIIAERDLFDNWVKSHP A+GLLHKSF YYDDLSYVF +DRAT AR +TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPD
        VGSNV N FND VPL D +D+DIP MYSQ V +SPD
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPD

KAA0044610.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5061.96Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP   ++ +   D R+K+LK+T+QAIAEMRGP+C+GFGWN+E +CI+AE++LFDNWV+SHP AKGLL+K F YYD+L+YVFGRDRATG  A+TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSN P    D   + D  +ED P +YSQ VD+S DD+  +R  R+SDGR  SSGSKRKRG Q
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

TYJ96194.1 retrotransposon protein [Cucumis melo var. makuwa]6.3e-5061.96Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP   ++ +   D R+K+LK+T+QAIAEMRGP+C+GFGWN+E +CI+AE++LFDNWV+SHP AKGLL+K F YYD+L+YVFGRDRATG  A+TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSN P    D   + D  +ED P +YSQ VD+S DD+  +R  R+SDGR  SSGSKRKRG Q
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]8.1e-6677.3Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP TNIQ S T D  VKSLKKTY AIAEMRGPSC+GFGWNEE+QCIIAERDLFD+W+KSHP AKGLLHKSF YYDDLSYVFG+DRATGAR++TF +
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSNV N FND++PL D HDEDIPTMYSQ V MSPD+M G RAG++S+ RN SS SKRKRG +
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859533.9e-6677.3Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP TNIQ S T D  VKSLKKTY AIAEMRGPSC+GFGWNEE+QCIIAERDLFD+W+KSHP AKGLLHKSF YYDDLSYVFG+DRATGAR++TF +
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSNV N FND++PL D HDEDIPTMYSQ V MSPD+M G RAG++S+ RN SS SKRKRG +
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

A0A5A7SWU2 Retrotransposon protein3.0e-5061.96Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP   ++ +   D R+K+LK+T+QAIAEMRGP+C+GFGWN+E +CIIAE++LFDNWV+SHP AKGLL+K F YYD+L+YVFGRDRATG  A+TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        +GSN P    D   + D   ED P MYSQR+D+S DD+  +R  R+S+GR  SSGSKRKRG Q
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

A0A5A7TJS2 Retrotransposon protein1.8e-5073.53Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        M +KL DTNIQGS   D RVKSLKK   +   MRGPSC+GFGWNE++QCIIAERDLFDNWVKSHP A+GLLHKSF YYDDLSYVF +DRAT AR +TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPD
        VGSNV N FND VPL D +D+DIP MYSQ V +SPD
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPD

A0A5A7U0H7 Retrotransposon protein3.9e-6677.3Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP TNIQ S T D  VKSLKKTY AIAEMRGPSC+GFGWNEE+QCIIAERDLFD+W+KSHP AKGLLHKSF YYDDLSYVFG+DRATGAR++TF +
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSNV N FND++PL D HDEDIPTMYSQ V MSPD+M G RAG++S+ RN SS SKRKRG +
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

A0A5D3CWL2 Retrotransposon protein3.0e-5061.96Show/hide
Query:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD
        MAEKLP   ++ +   D R+K+LK+T+QAIAEMRGP+C+GFGWN+E +CI+AE++LFDNWV+SHP AKGLL+K F YYD+L+YVFGRDRATG  A+TFAD
Subjt:  MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFAD

Query:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ
        VGSN P    D   + D  +ED P +YSQ VD+S DD+  +R  R+SDGR  SSGSKRKRG Q
Subjt:  VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G24960.1 unknown protein3.2e-0433.77Show/hide
Query:  NGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVF------GRD-RATGARAKTFADVGSNVPNS
        +GF W+E    I A+  ++D+++K HP A+    KS   Y+DL  +F      G D R  G+ A+T     S   NS
Subjt:  NGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVF------GRD-RATGARAKTFADVGSNVPNS

AT2G24960.2 unknown protein1.6e-0628.38Show/hide
Query:  RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATG
        R K L++ Y  I  +     NGF W+     +IA+ D+++ ++++HP A+    K+   Y +L ++FG++ + G
Subjt:  RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATG

AT4G02210.1 unknown protein2.5e-0426.87Show/hide
Query:  RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVF
        R K+L+  ++++  +     +GF W++  Q ++A+  ++D ++K HP ++    KS   Y DL  V+
Subjt:  RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVF

AT4G02210.2 unknown protein2.5e-0426.87Show/hide
Query:  RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVF
        R K+L+  ++++  +     +GF W++  Q ++A+  ++D ++K HP ++    KS   Y DL  V+
Subjt:  RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVF

AT5G27260.1 unknown protein9.8e-0926Show/hide
Query:  LPDTNIQGSPTNDY-----RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFA
        +P+ N +   + +Y     R+K LK  YQ+  +++  S +GFGW+   +   A  +++ +++K+HP  K L + +F ++D+L  +FG   ATG  A    
Subjt:  LPDTNIQGSPTNDY-----RVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFA

Query:  D--------VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGT
        D         G N    + D    D++++ D  T +      +P    GT
Subjt:  D--------VGSNVPNSFNDSVPLDDLHDEDIPTMYSQRVDMSPDDMVGT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTAATGATTATCGTGTGAAATCCCTTAAGAAAACTTATCAAGCAATTGCAGAAATGAGGGGGCCATC
CTGTAATGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACGCGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGCGAAAGGACTATTACACAAAT
CATTTACATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCGGGCAACAGGAGCACGTGCAAAGACATTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAAC
GATAGTGTTCCACTTGATGATCTACATGACGAAGACATCCCGACGATGTATAGCCAAAGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGGTCAAG
TGATGGGCGAAACTATTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGGAGAAGTTGCCCGACACTAACATCCAAGGATCACCGACTAATGATTATCGTGTGAAATCCCTTAAGAAAACTTATCAAGCAATTGCAGAAATGAGGGGGCCATC
CTGTAATGGGTTCGGGTGGAATGAAGAATATCAGTGCATCATCGCGGAACGCGACTTGTTTGATAATTGGGTCAAGAGTCATCCTGGGGCGAAAGGACTATTACACAAAT
CATTTACATATTATGACGATTTGTCGTACGTGTTCGGCAGAGATCGGGCAACAGGAGCACGTGCAAAGACATTTGCTGACGTGGGATCTAATGTGCCAAACAGTTTCAAC
GATAGTGTTCCACTTGATGATCTACATGACGAAGACATCCCGACGATGTATAGCCAAAGGGTGGATATGTCCCCAGATGACATGGTAGGAACACGTGCAGGTCGGTCAAG
TGATGGGCGAAACTATTCAAGTGGGAGTAAGAGGAAACGGGGTGGCCAACATAGTTAA
Protein sequenceShow/hide protein sequence
MAEKLPDTNIQGSPTNDYRVKSLKKTYQAIAEMRGPSCNGFGWNEEYQCIIAERDLFDNWVKSHPGAKGLLHKSFTYYDDLSYVFGRDRATGARAKTFADVGSNVPNSFN
DSVPLDDLHDEDIPTMYSQRVDMSPDDMVGTRAGRSSDGRNYSSGSKRKRGGQHS