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PI0012443 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012443
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr06:12288768..12289450
RNA-Seq ExpressionPI0012443
SyntenyPI0012443
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]1.3e-5072.41Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFFEIN+LPE+E+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

KAA0045289.1 retrotransposon protein [Cucumis melo var. makuwa]8.4e-5071.72Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEER+EGTEKE++GLKEMM+E++K+++RL E+MRE NN+ +KE S  SDGS +KLKG MEE  T T+     +DRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFFEI +LPESE+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

KAA0065941.1 retrotransposon protein [Cucumis melo var. makuwa]2.9e-5069.66Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEE ++GTEKE++GLKE+MLE+KK ++RLA++M+ES + K++E S  S+GS +KLKG MEE   MT+    SIDRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFF+IN+LPE+E+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

TYK02434.1 retrotransposon protein [Cucumis melo var. makuwa]4.9e-5069.74Show/hide
Query:  GVCTHSMAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLG
        GV T  MAQ+QMEER+EGTEKE+L LKEM+LE+KKVV+RLA++M+E+++ K+KE S   SDGS +KLKG M+E   +T+   T  D+SKYKKLEM MFLG
Subjt:  GVCTHSMAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLG

Query:  ENPESWVYRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        ENPESWVYRAE FFEIN+LPESE+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  ENPESWVYRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]1.3e-5072.41Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFFEIN+LPE+E+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein6.3e-5172.41Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFFEIN+LPE+E+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

A0A5A7TVL8 Retrotransposon protein4.1e-5071.72Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEER+EGTEKE++GLKEMM+E++K+++RL E+MRE NN+ +KE S  SDGS +KLKG MEE  T T+     +DRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFFEI +LPESE+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

A0A5D3BTE3 Retrotransposon protein2.4e-5069.74Show/hide
Query:  GVCTHSMAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLG
        GV T  MAQ+QMEER+EGTEKE+L LKEM+LE+KKVV+RLA++M+E+++ K+KE S   SDGS +KLKG M+E   +T+   T  D+SKYKKLEM MFLG
Subjt:  GVCTHSMAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGS-CVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLG

Query:  ENPESWVYRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        ENPESWVYRAE FFEIN+LPESE+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  ENPESWVYRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

A0A5D3CXP0 Uncharacterized protein6.3e-5172.41Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEERLEGTEKEVL LKEMMLE+KK +DRLA+++RE+ + K+KE S  SDGS +K+KG MEE     +  T  +DRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFFEIN+LPE+E+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

A0A5D3E4T6 Retrotransposon protein1.4e-5069.66Show/hide
Query:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV
        MAQ+QMEE ++GTEKE++GLKE+MLE+KK ++RLA++M+ES + K++E S  S+GS +KLKG MEE   MT+    SIDRSKYKKLEM MFLGENPESWV
Subjt:  MAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKKLEMSMFLGENPESWV

Query:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW
        YRAEHFF+IN+LPE+E+VKV VVSFGQDEVDW+R ++NRKKVESW
Subjt:  YRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCTCAAGGAAGAAGATTTTTCCCAGCCTCCTTTCATAGGTGCTGGAATTCTGGGGTGTGCACGCATTCGATGGCTCAGAAACAGATGGAGGAGAGGTTGGAAGG
AACGGAAAAAGAGGTGTTGGGATTAAAGGAGATGATGCTGGAACTCAAGAAGGTTGTTGACCGATTAGCCGAAGACATGAGGGAAAGCAACAACACTAAACGAAAGGAGG
GATCATGTGTGTCCGACGGATCCTCATTGAAACTAAAAGGAATGATGGAGGAACAAGGGACCATGACTGATCCAGGGACAACTTCCATAGACCGAAGTAAATATAAAAAG
CTGGAGATGTCAATGTTCTTGGGAGAGAATCCAGAATCTTGGGTCTATAGAGCAGAGCACTTCTTTGAAATCAATGATCTGCCAGAGTCAGAAAGGGTCAAAGTAACAGT
GGTGAGCTTTGGTCAAGATGAGGTAGACTGGTTTAGACGGAACAATAATAGAAAGAAAGTTGAATCATGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCTCAAGGAAGAAGATTTTTCCCAGCCTCCTTTCATAGGTGCTGGAATTCTGGGGTGTGCACGCATTCGATGGCTCAGAAACAGATGGAGGAGAGGTTGGAAGG
AACGGAAAAAGAGGTGTTGGGATTAAAGGAGATGATGCTGGAACTCAAGAAGGTTGTTGACCGATTAGCCGAAGACATGAGGGAAAGCAACAACACTAAACGAAAGGAGG
GATCATGTGTGTCCGACGGATCCTCATTGAAACTAAAAGGAATGATGGAGGAACAAGGGACCATGACTGATCCAGGGACAACTTCCATAGACCGAAGTAAATATAAAAAG
CTGGAGATGTCAATGTTCTTGGGAGAGAATCCAGAATCTTGGGTCTATAGAGCAGAGCACTTCTTTGAAATCAATGATCTGCCAGAGTCAGAAAGGGTCAAAGTAACAGT
GGTGAGCTTTGGTCAAGATGAGGTAGACTGGTTTAGACGGAACAATAATAGAAAGAAAGTTGAATCATGGTAA
Protein sequenceShow/hide protein sequence
MAAQGRRFFPASFHRCWNSGVCTHSMAQKQMEERLEGTEKEVLGLKEMMLELKKVVDRLAEDMRESNNTKRKEGSCVSDGSSLKLKGMMEEQGTMTDPGTTSIDRSKYKK
LEMSMFLGENPESWVYRAEHFFEINDLPESERVKVTVVSFGQDEVDWFRRNNNRKKVESW