CuGenDBv2

Gene ID	PI0012448
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase
Genome location	chr05:8893652..8894249
RNA-Seq Expression	PI0012448
Synteny	PI0012448
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

4.6e-50

63.45

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +GS V+SHDG+ Q+ VN+F NSLGSQ IGYREL P+++++VQF+WSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GF+KGAW+VVG DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        + VLHFF+TCYLPIG+N T ITLI    GAER+EDFRPI CCNV+
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

KAA0059752.1 F17F8.5 [Cucumis melo var. makuwa]

3.0e-49

62.76

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +G+ V+SHDG+ Q+ VN+F NSLGSQ IGYREL P+++++VQF+WSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GFFKGAW+VVG DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        D VLHFF+TCYLP+G+N T ITLI    GAER+EDFR I CCNV+
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

KAA0062888.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]

4.4e-53

68.28

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +GS V+SHDG+VQ+ VN+FRNSLGSQ IGYREL+P+++++VQFRWSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GFFKGAW+VV  DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        DVVLHFF+TCYLPIG+N TVITLI  R GAE+ME+FRPI CCNVI
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

KAA0065355.1 F17F8.5 [Cucumis melo var. makuwa]

2.2e-52

67.59

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAPRC-DEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +GS ++SHDG+V +VVN+FRNSLGSQ IGYREL P++E++VQFRWSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GF KGAW+VVG DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAPRC-DEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        D VLHFF+TCYLPIG+N T ITLI  R GAERME+FRPI CCNVI
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

XP_008452126.1 PREDICTED: uncharacterized protein LOC103493225 [Cucumis melo]

9.6e-48

63.57

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Query:  STVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLH
        S V+SHDG+ Q+ VN+F NSLGSQ IGYREL P+++++VQF+WSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GFFKGAW+V+G DF D VLH
Subjt:  STVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLH

Query:  FFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        FF+T YLP+G+N T ITLI    GAER+EDFRPI CCNV+
Subjt:  FFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZS0 Reverse transcriptase domain-containing protein

2.2e-50

63.45

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +GS V+SHDG+ Q+ VN+F NSLGSQ IGYREL P+++++VQF+WSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GF+KGAW+VVG DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        + VLHFF+TCYLPIG+N T ITLI    GAER+EDFRPI CCNV+
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

A0A5A7UP65 Reverse transcriptase

4.6e-48

63.57

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Query:  STVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLH
        S V+SHDG+ Q+ VN+F NSLGSQ IGYREL P+++++VQF+WSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GFFKGAW+V+G DF D VLH
Subjt:  STVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLH

Query:  FFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        FF+T YLP+G+N T ITLI    GAER+EDFRPI CCNV+
Subjt:  FFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

A0A5A7UV01 F17F8.5

1.4e-49

62.76

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +G+ V+SHDG+ Q+ VN+F NSLGSQ IGYREL P+++++VQF+WSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GFFKGAW+VVG DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        D VLHFF+TCYLP+G+N T ITLI    GAER+EDFR I CCNV+
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

A0A5A7V5J2 Non-LTR retroelement reverse transcriptase-like protein

2.1e-53

68.28

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +GS V+SHDG+VQ+ VN+FRNSLGSQ IGYREL+P+++++VQFRWSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GFFKGAW+VV  DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        DVVLHFF+TCYLPIG+N TVITLI  R GAE+ME+FRPI CCNVI
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

A0A5A7VHU9 F17F8.5

1.1e-52

67.59

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Query:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAPRC-DEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS
        +D +GS ++SHDG+V +VVN+FRNSLGSQ IGYREL P++E++VQFRWSEEC  ALQ P   +E++RVLF++DS KAP  DG+  GF KGAW+VVG DF 
Subjt:  MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAPRC-DEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFS

Query:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI
        D VLHFF+TCYLPIG+N T ITLI  R GAERME+FRPI CCNVI
Subjt:  DVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPILCCNVI

SwissProt top hits

e value

%identity

Alignment

P14381 Transposon TX1 uncharacterized 149 kDa protein

8.0e-05

27.47

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Query:  SEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPI
        SE     L+ P   DE+ + L  +  +K+P  DG    FF+  W+ +G DF  V+   F    LP+     V++L+  +     ++++RP+
Subjt:  SEECSHALQAP-RCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLHFFDTCYLPIGINGTVITLISNRCGAERMEDFRPI

Arabidopsis top hits

e value

%identity

Alignment

AT1G43760.1 DNAse I-like superfamily protein

2.4e-12

32.06

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Query:  QVVVNFFRNSLGSQV-IGYRELYPLLEEVVQFRWSEECSHALQA-PRCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLHFFDTCYLPI
        +++V ++ + LGS   I   +    ++++  FR ++  +  L A P   EI   +FA+  +KAP  D + A FF  +W VV       V  FF T +L  
Subjt:  QVVVNFFRNSLGSQV-IGYRELYPLLEEVVQFRWSEECSHALQA-PRCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLHFFDTCYLPI

Query:  GINGTVITLISNRCGAERMEDFRPILCCNVI
          N T ITLI    G +++  FRP+ CC V+
Subjt:  GINGTVITLISNRCGAERMEDFRPILCCNVI

Sequences

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CDS sequence

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ATGGATTATGAGGGTAGTACGGTGACATCCCATGATGGGTTGGTTCAAGTGGTTGTTAACTTCTTTCGTAATAGTTTGGGTTCCCAGGTGATTGGCTATAGGGAGCTCTA
TCCTTTGCTGGAGGAGGTGGTTCAATTTAGATGGTCTGAGGAGTGTTCTCATGCGTTACAGGCTCCTAGGTGTGATGAGATTAAGAGGGTGTTATTCGCTATTGATAGTA
GCAAGGCTCCTAGTTCTGATGGTTATTTGGCGGGGTTCTTCAAAGGTGCTTGGAATGTGGTGGGTGCAGATTTTAGTGATGTTGTGTTGCATTTCTTTGACACTTGTTAT
CTGCCTATTGGGATTAATGGTACTGTGATAACCCTCATCTCCAATCGTTGTGGGGCTGAGCGTATGGAGGATTTTAGGCCTATTTTGTGTTGTAATGTGATTATACAACA
ACAAGGAGGACCTCACAGCCCGAGGTCAAGGCACTAG

mRNA sequence

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Protein sequence

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MDYEGSTVTSHDGLVQVVVNFFRNSLGSQVIGYRELYPLLEEVVQFRWSEECSHALQAPRCDEIKRVLFAIDSSKAPSSDGYLAGFFKGAWNVVGADFSDVVLHFFDTCY
LPIGINGTVITLISNRCGAERMEDFRPILCCNVIIQQQGGPHSPRSRH

PI0012448 (gene) of Melon (PI 482460) v1 genome