; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0012449 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012449
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr08:9508412..9508810
RNA-Seq ExpressionPI0012449
SyntenyPI0012449
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032798.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.8e-5481.4Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        D+N VDAAA G LADKTP EARELI RMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+ +PNDKCP ++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR
        +R+YDP GNTYN GWRDNPNLRWGNDNQ+
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR

KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-5582.17Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        D+NTVDA AGG LADK PTEARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+ HPNDKCP+++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR
        +RKYDP GNTYN+GWRDNPNLRWGNDNQ+
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.4e-5481.25Show/hide
Query:  KNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANVI
        +NTVD A GG LADKTPTEARELISRMAENSQ+FGNRAS+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+ HPNDKCP+++E+ NV+
Subjt:  KNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANVI

Query:  RKYDPLGNTYNAGWRDNPNLRWGNDNQR
        R+YDP GNT N+GWRDNPN RWGNDNQ+
Subjt:  RKYDPLGNTYNAGWRDNPNLRWGNDNQR

KAA0056713.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.3e-5381.25Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        DKNTVDAAAGG LADKTP EA+ELISRMAENSQ+FGNRASEL NSLTKEVSE+KSQMLNMTTLLTSFVQG  +KV KCGV G + HPNDKCP+++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQ
        ++KYDP GNTYN+GWRDNPNLRWGNDNQ
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQ

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-5379.84Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        D+NT+D  AGG LADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGL+ HPNDKC  ++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR
        +R+YDP  NTYN+GWRDNPNLRWGNDNQ+
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR

TrEMBL top hitse value%identityAlignment
A0A5A7SQH8 Retrotransposon gag protein4.7e-5481.4Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        D+N VDAAA G LADKTP EARELI RMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+ +PNDKCP ++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR
        +R+YDP GNTYN GWRDNPNLRWGNDNQ+
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR

A0A5A7ULC7 Retrotransposon gag protein6.2e-5481.25Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        DKNTVDAAAGG LADKTP EA+ELISRMAENSQ+FGNRASEL NSLTKEVSE+KSQMLNMTTLLTSFVQG  +KV KCGV G + HPNDKCP+++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQ
        ++KYDP GNTYN+GWRDNPNLRWGNDNQ
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQ

A0A5A7ULU1 Retrotransposon gag protein2.1e-5481.25Show/hide
Query:  KNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANVI
        +NTVD A GG LADKTPTEARELISRMAENSQ+FGNRAS+LDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+ HPNDKCP+++E+ NV+
Subjt:  KNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANVI

Query:  RKYDPLGNTYNAGWRDNPNLRWGNDNQR
        R+YDP GNT N+GWRDNPN RWGNDNQ+
Subjt:  RKYDPLGNTYNAGWRDNPNLRWGNDNQR

A0A5A7V0Q7 Retrotransposon gag protein1.1e-5379.84Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        D+NT+D  AGG LADKTPTEARELISRM ENSQ+FGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG   KV KCGVCGL+ HPNDKC  ++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR
        +R+YDP  NTYN+GWRDNPNLRWGNDNQ+
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR

A0A5D3CRR8 Retrotransposon gag protein8.6e-5682.17Show/hide
Query:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV
        D+NTVDA AGG LADK PTEARELIS+MAENSQ+F NRASELDNSLTKEVSELKSQMLNMTTLLTSFVQG  +KV KCGVCGL+ HPNDKCP+++E+ N+
Subjt:  DKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANV

Query:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR
        +RKYDP GNTYN+GWRDNPNLRWGNDNQ+
Subjt:  IRKYDPLGNTYNAGWRDNPNLRWGNDNQR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAAAAATACAGTAGATGCAGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCCGAAAATTCACAGAATTTTGG
CAACAGGGCATCCGAGCTCGATAATTCATTAACAAAGGAGGTAAGTGAATTGAAATCACAGATGCTTAATATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGAAATG
TGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGAACATCCTAATGACAAGTGCCCTGACCTTGTTGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCTTGGAAAC
ACTTACAATGCTGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGACAACCAACGACCCGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAAAAATACAGTAGATGCAGCAGCAGGTGGCACTTTAGCTGATAAGACCCCTACTGAAGCTAGAGAGCTCATTTCAAGGATGGCCGAAAATTCACAGAATTTTGG
CAACAGGGCATCCGAGCTCGATAATTCATTAACAAAGGAGGTAAGTGAATTGAAATCACAGATGCTTAATATGACTACCTTACTAACCTCTTTTGTGCAAGGTGGAAATG
TGAAAGTTGCAAAATGTGGAGTTTGTGGTTTAATAGAACATCCTAATGACAAGTGCCCTGACCTTGTTGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCTTGGAAAC
ACTTACAATGCTGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAACGACAACCAACGACCCGCATAA
Protein sequenceShow/hide protein sequence
MDKNTVDAAAGGTLADKTPTEARELISRMAENSQNFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGGNVKVAKCGVCGLIEHPNDKCPDLVEEANVIRKYDPLGN
TYNAGWRDNPNLRWGNDNQRPA