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PI0012456 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012456
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr01:7117536..7118690
RNA-Seq ExpressionPI0012456
SyntenyPI0012456
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056663.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2572.83Show/hide
Query:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K  CYH +Q GHWLRNC KYLAKKKAEKE QGK
Subjt:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

KAA0059877.1 gag/pol protein [Cucumis melo var. makuwa]3.6e-2570.21Show/hide
Query:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKK---KKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        +  LT GKEKE+EANVATTK+KF RGSSSK+KVGP+   +   KK KGKTPK +KGKK  +K  CYH  +NGHWLRNCLKYLA+KKAEKEAQGK
Subjt:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKK---KKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

KAA0061924.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2470.21Show/hide
Query:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        + TLT+GKEK+VEANVATTK KF RGSSSK K GP+  K   KKK KGKTPK +KGKKA +K  CYH  QNGHW+RNC KYL +KKAEKE QGK
Subjt:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

TYK04622.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2572.83Show/hide
Query:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K  CYH +Q GHWLRNC KYLAKKKAEKE QGK
Subjt:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

TYK31700.1 gag/pol protein [Cucumis melo var. makuwa]2.1e-2571.28Show/hide
Query:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        + TLT+GK K+VEANVA TK+KF RGSSSKTK GP   K   KKK KGKTPK +KGKKA++K  CYHY QNGHWLRNC KYLA+KKAEKE QG+
Subjt:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

TrEMBL top hitse value%identityAlignment
A0A5A7UL81 Gag/pol protein3.0e-2572.83Show/hide
Query:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K  CYH +Q GHWLRNC KYLAKKKAEKE QGK
Subjt:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

A0A5D3C0C2 Gag/pol protein3.0e-2572.83Show/hide
Query:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        TLT+GKEK+VEANV TTK+KF RGSSSK K GP+  K   KKKEKG+TPK +KGKKA +K  CYH +Q GHWLRNC KYLAKKKAEKE QGK
Subjt:  TLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

A0A5D3DK93 Gag/pol protein6.6e-2570.21Show/hide
Query:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        + TLT+GKEK+VEANVATTK KF RGSSSK K GP+  K   KKK KGKTPK +KGKKA +K  CYH  QNGHW+RNC KYL +KKAEKE QGK
Subjt:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

A0A5D3DMH3 Gag/pol protein1.7e-2570.21Show/hide
Query:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKK---KKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        +  LT GKEKE+EANVATTK+KF RGSSSK+KVGP+   +   KK KGKTPK +KGKK  +K  CYH  +NGHWLRNCLKYLA+KKAEKEAQGK
Subjt:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKK---KKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

A0A5D3E7W3 Gag/pol protein1.0e-2571.28Show/hide
Query:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK
        + TLT+GK K+VEANVA TK+KF RGSSSKTK GP   K   KKK KGKTPK +KGKKA++K  CYHY QNGHWLRNC KYLA+KKAEKE QG+
Subjt:  YHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMK---KKKEKGKTPKTSKGKKATDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAACATACACCTCATCAGTATTCAGGATTACGTCAAGTCTTCTACAACTGCAGGTTCTTCTGCAACTTTAGGTTCTGCTATGATGAAGACTGTAAAGTTCAAACT
TGCGCTACAAAACTCTTTCCAAATAGCCCAATACGAATTATTTTGTTCCTTATACCATACTCTTACTCTGGGTAAGGAAAAGGAAGTGGAAGCAAATGTTGCTACCACTA
AAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAACCAAAGTTGGTCCCACAAACATGAAAAAGAAGAAGGAAAAGGGAAAGACTCCCAAGACGAGCAAGGGAAAGAAAGCT
ACAGATAAATGTATATGTTACCACTATAACCAAAATGGTCATTGGTTGAGGAACTGTCTGAAGTACCTTGCAAAAAAGAAAGCAGAGAAGGAAGCACAAGGAAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAATAACATACACCTCATCAGTATTCAGGATTACGTCAAGTCTTCTACAACTGCAGGTTCTTCTGCAACTTTAGGTTCTGCTATGATGAAGACTGTAAAGTTCAAACT
TGCGCTACAAAACTCTTTCCAAATAGCCCAATACGAATTATTTTGTTCCTTATACCATACTCTTACTCTGGGTAAGGAAAAGGAAGTGGAAGCAAATGTTGCTACCACTA
AAAAGAAGTTTTTAAGAGGATCGTCCTCTAAAACCAAAGTTGGTCCCACAAACATGAAAAAGAAGAAGGAAAAGGGAAAGACTCCCAAGACGAGCAAGGGAAAGAAAGCT
ACAGATAAATGTATATGTTACCACTATAACCAAAATGGTCATTGGTTGAGGAACTGTCTGAAGTACCTTGCAAAAAAGAAAGCAGAGAAGGAAGCACAAGGAAAATAG
Protein sequenceShow/hide protein sequence
MNNIHLISIQDYVKSSTTAGSSATLGSAMMKTVKFKLALQNSFQIAQYELFCSLYHTLTLGKEKEVEANVATTKKKFLRGSSSKTKVGPTNMKKKKEKGKTPKTSKGKKA
TDKCICYHYNQNGHWLRNCLKYLAKKKAEKEAQGK