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PI0012458 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012458
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr03:16559264..16559975
RNA-Seq ExpressionPI0012458
SyntenyPI0012458
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003677 - DNA binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036811.1 DNA-binding protein HEXBP-like [Cucumis melo var. makuwa]3.8e-2471.43Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI DLRFVLM+ECP  P + ASQ+V+DAYD WTKANDKAR++ILASMSD+LSKK  +I K+K GK KGP +A +GK KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

KAA0042194.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.2e-2371.43Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI +L FVLMEECP  P +NASQ+V+D YD W KANDKAR+YILASMS++LSKK  +I KKKG K KGP  AV+GK KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

KAA0045342.1 gag/pol protein [Cucumis melo var. makuwa]1.4e-2371.43Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI DLRFVLMEEC   P +NASQ+VKDAY+ WT  NDKAR+YILASMSD+LSKK  +I K+KGGK  GP VA + K KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

TYJ96919.1 gag/pol protein [Cucumis melo var. makuwa]4.4e-2573.63Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI DLRFVLMEEC   P +NASQ+V+DAYD WT ANDKAR+YILASMSD+LSKK  +I K+KGGK  GP VA +GK KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

TYK15861.1 gag/pol protein [Cucumis melo var. makuwa]3.2e-2353.73Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKK-------------------------------------------
        MILVI DLRFVLMEECP  P +NASQ+VKDAYD WTKANDKAR+YILASMSD+LSKK                                           
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKK-------------------------------------------

Query:  TKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        +KKIQK K GK KGP +A +GK KAKVA KGKCF
Subjt:  TKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

TrEMBL top hitse value%identityAlignment
A0A5A7TFJ2 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-2371.43Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI +L FVLMEECP  P +NASQ+V+D YD W KANDKAR+YILASMS++LSKK  +I KKKG K KGP  AV+GK KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

A0A5A7TPP4 Gag/pol protein6.9e-2471.43Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI DLRFVLMEEC   P +NASQ+VKDAY+ WT  NDKAR+YILASMSD+LSKK  +I K+KGGK  GP VA + K KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

A0A5D3BA36 DNA-binding protein HEXBP-like1.8e-2471.43Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI DLRFVLM+ECP  P + ASQ+V+DAYD WTKANDKAR++ILASMSD+LSKK  +I K+K GK KGP +A +GK KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

A0A5D3BD52 Gag/pol protein2.1e-2573.63Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        MILVI DLRFVLMEEC   P +NASQ+V+DAYD WT ANDKAR+YILASMSD+LSKK  +I K+KGGK  GP VA +GK KAKVA KGKCF
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

A0A5D3CVC5 Gag/pol protein1.5e-2353.73Show/hide
Query:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKK-------------------------------------------
        MILVI DLRFVLMEECP  P +NASQ+VKDAYD WTKANDKAR+YILASMSD+LSKK                                           
Subjt:  MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKK-------------------------------------------

Query:  TKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF
        +KKIQK K GK KGP +A +GK KAKVA KGKCF
Subjt:  TKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCTGGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCATTCCCCTGCTAGAAATGCATCTCAGACTGTCAAGGATGCATATGACTGCTGGACAAA
GGCCAATGACAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGAGAAAGGTCCTGTTG
TTGCTGTTAAGGGCAAGGAGAAGGCTAAGGTAGCTGACAAGGGGAAGTGCTTCCTGGTACGAGGATTTCATATGATGAAATGTGATGAAATGATGTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTCTGGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCATTCCCCTGCTAGAAATGCATCTCAGACTGTCAAGGATGCATATGACTGCTGGACAAA
GGCCAATGACAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTACTGAGCAAGAAGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAAGGAGAAAGGTCCTGTTG
TTGCTGTTAAGGGCAAGGAGAAGGCTAAGGTAGCTGACAAGGGGAAGTGCTTCCTGGTACGAGGATTTCATATGATGAAATGTGATGAAATGATGTGA
Protein sequenceShow/hide protein sequence
MILVIDDLRFVLMEECPHSPARNASQTVKDAYDCWTKANDKARVYILASMSDVLSKKTKKIQKKKGGKEKGPVVAVKGKEKAKVADKGKCFLVRGFHMMKCDEMM