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PI0012461 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012461
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPol protein
Genome locationchr05:7464795..7465034
RNA-Seq ExpressionPI0012461
SyntenyPI0012461
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR016197 - Chromo-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037901.1 pol protein [Cucumis melo var. makuwa]5.3e-3184.81Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

KAA0040871.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]2.4e-3184.81Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV+DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

KAA0043066.1 pol protein [Cucumis melo var. makuwa]4.1e-3186.08Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNH++EEATWEREDDMR RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

KAA0053631.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]3.1e-3187.18Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFE
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHQ+EEATWEREDDMR+RYPELFE
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFE

KAA0068212.1 pol protein [Cucumis melo var. makuwa]1.1e-3186.08Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNH++EEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

TrEMBL top hitse value%identityAlignment
A0A5A7T8G8 Reverse transcriptase2.6e-3184.81Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

A0A5A7TGS7 Reverse transcriptase1.2e-3184.81Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV+DPSHV+DYEPL IDENLSY E PVE+LA+EVKTLRN+EI LVKVLWRNH++EEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

A0A5A7TM23 Pol protein2.0e-3186.08Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNH++EEATWEREDDMR RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

A0A5A7UJG5 Ty3-gypsy retrotransposon protein1.5e-3187.18Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFE
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI LVKVLWRNHQ+EEATWEREDDMR+RYPELFE
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFE

A0A5A7VIQ0 Pol protein5.2e-3286.08Show/hide
Query:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG
        MLRKYV DPSHV+DYEPL IDENLSYVE PVE+LA+EVKTLRN+EI+LVKVLWRNH++EEATWEREDDMR+RYPELFEG
Subjt:  MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGAGGAAATACGTGGTTGACCCATCTCATGTTTTGGATTATGAGCCTTTAGCGATTGATGAGAATTTGAGCTACGTAGAGCATCCAGTTGAGATTTTAGCCAAGGA
AGTAAAGACGCTCCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCAGATGGAAGAGGCCACATGGGAGCGAGAGGATGACATGAGAGCTCGTTACC
CAGAGTTGTTCGAGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGAGGAAATACGTGGTTGACCCATCTCATGTTTTGGATTATGAGCCTTTAGCGATTGATGAGAATTTGAGCTACGTAGAGCATCCAGTTGAGATTTTAGCCAAGGA
AGTAAAGACGCTCCGTAACCGGGAAATTGCCTTAGTAAAGGTCCTTTGGCGCAATCACCAGATGGAAGAGGCCACATGGGAGCGAGAGGATGACATGAGAGCTCGTTACC
CAGAGTTGTTCGAGGGTTAG
Protein sequenceShow/hide protein sequence
MLRKYVVDPSHVLDYEPLAIDENLSYVEHPVEILAKEVKTLRNREIALVKVLWRNHQMEEATWEREDDMRARYPELFEG