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PI0012462 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012462
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr10:13735217..13735384
RNA-Seq ExpressionPI0012462
SyntenyPI0012462
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036810.1 RING-H2 finger protein ATL66 [Cucumis melo var. makuwa]7.0e-0660Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSP++IM  +    S+ +  S+G KRKRGGQA+E A+IIR+A EYANDQLK IAE
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
KAA0048280.1 retrotransposon protein [Cucumis melo var. makuwa]4.1e-0658.18Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSPDD+M  R+ R+S+ R  SSGSKRKR G A ++  I+R+AMEY N+QL  IAE
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
KAA0052248.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-0656.36Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSPD++M  R+VR+SK+R  SSGSKRKR GQA ++ ++IR+A+E+ N+QL  IA+
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
KAA0060365.1 retrotransposon protein [Cucumis melo var. makuwa]4.4e-0867.27Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        M PDDIM  R  R S+ R GSSGSKRK+GGQ +E+ +IIRSAMEY N QLK IAE
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
KAA0063768.1 retrotransposon protein [Cucumis melo var. makuwa]7.0e-0658.18Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSPD++M  R+  +SK R  SSGSKRKRGGQA+++  IIR+A+EY N+QL  IA+
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
TrEMBL top hitse value%identityAlignment
A0A5A7T0C2 RING-H2 finger protein ATL663.4e-0660Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSP++IM  +    S+ +  S+G KRKRGGQA+E A+IIR+A EYANDQLK IAE
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
A0A5A7TYQ6 Retrotransposon protein2.0e-0658.18Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSPDD+M  R+ R+S+ R  SSGSKRKR G A ++  I+R+AMEY N+QL  IAE
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
A0A5A7V3C0 Retrotransposon protein2.1e-0867.27Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        M PDDIM  R  R S+ R GSSGSKRK+GGQ +E+ +IIRSAMEY N QLK IAE
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
A0A5A7V469 Retrotransposon protein3.4e-0658.18Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        M  DDIM  R  R ++ R GSSGSKRK+GGQA+E  +IIR+ ME++ND+LK I E
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
A0A5D3C2D3 Retrotransposon protein3.4e-0658.18Show/hide
Query:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
        MSPD++M  R+  +SK R  SSGSKRKRGGQA+++  IIR+A+EY N+QL  IA+
Subjt:  MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAA
AATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTAAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGAAAACGGGGAGGGCAGGCATTGGAGGCGGCAAA
AATTATTCGCAGTGCCATGGAATATGCTAATGACCAACTTAAGGTCATTGCAGAATGA
Protein sequenceShow/hide protein sequence
MSPDDIMTPRSVRMSKARPGSSGSKRKRGGQALEAAKIIRSAMEYANDQLKVIAE