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PI0012474 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012474
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr06:17650213..17650563
RNA-Seq ExpressionPI0012474
SyntenyPI0012474
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-4380Show/hide
Query:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS
        P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE S EEMPH NIMSVMVTDVDTSE+RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESS
Subjt:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS

Query:  HTYTIKNKDKGKTIL
        HT+TIKN +KGK I+
Subjt:  HTYTIKNKDKGKTIL
KAA0060608.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-4275.86Show/hide
Query:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES
        MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTSEDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAES
Subjt:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES

Query:  SHTYTIKNKDKGKTIL
        SH++TIKN +KGK I+
Subjt:  SHTYTIKNKDKGKTIL
TYK02263.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.2e-4275.86Show/hide
Query:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES
        MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTSEDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAES
Subjt:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES

Query:  SHTYTIKNKDKGKTIL
        SH++TIKN +KGK I+
Subjt:  SHTYTIKNKDKGKTIL
TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-4582.61Show/hide
Query:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS
        P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE SSEEMPH NIMSVMVTDVDTSE+RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESS
Subjt:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS

Query:  HTYTIKNKDKGKTIL
        HT+TIKN DKGKTI+
Subjt:  HTYTIKNKDKGKTIL
TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-4377.39Show/hide
Query:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS
        PPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH  S + SSEEMPHPNIMSVMVT+VDTSE+RMTELE KVNML++ V ERDY+IA +K+HIESHDAAESS
Subjt:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS

Query:  HTYTIKNKDKGKTIL
        H +T+KN DKGK ++
Subjt:  HTYTIKNKDKGKTIL
TrEMBL top hitse value%identityAlignment
A0A5A7T5T3 Ty3-gypsy retrotransposon protein6.6e-4480Show/hide
Query:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS
        P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE S EEMPH NIMSVMVTDVDTSE+RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESS
Subjt:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS

Query:  HTYTIKNKDKGKTIL
        HT+TIKN +KGK I+
Subjt:  HTYTIKNKDKGKTIL
A0A5A7UZD5 Ty3-gypsy retrotransposon protein5.6e-4375.86Show/hide
Query:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES
        MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTSEDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAES
Subjt:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES

Query:  SHTYTIKNKDKGKTIL
        SH++TIKN +KGK I+
Subjt:  SHTYTIKNKDKGKTIL
A0A5D3BRH6 Ty3-gypsy retrotransposon protein5.6e-4375.86Show/hide
Query:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES
        MPPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH+   E S+EE+P PNIMS+MVTDVDTSEDRMT+LE KVNML++AV ERD++IA +K+HIESHDAAES
Subjt:  MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAES

Query:  SHTYTIKNKDKGKTIL
        SH++TIKN +KGK I+
Subjt:  SHTYTIKNKDKGKTIL
A0A5D3C857 Ty3-gypsy retrotransposon protein1.2e-4582.61Show/hide
Query:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS
        P FEVAKNIWEQ+SKPPKGGI+IKENP IDEH+ SFE SSEEMPH NIMSVMVTDVDTSE+RM ELE KVNML++AV ERDY+IAS+K+HIESHDAAESS
Subjt:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS

Query:  HTYTIKNKDKGKTIL
        HT+TIKN DKGKTI+
Subjt:  HTYTIKNKDKGKTIL
A0A5D3CD55 Ty3-gypsy retrotransposon protein1.1e-4377.39Show/hide
Query:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS
        PPFEVAKNIWEQ+SKPPKGGI+IKENP IDEH  S + SSEEMPHPNIMSVMVT+VDTSE+RMTELE KVNML++ V ERDY+IA +K+HIESHDAAESS
Subjt:  PPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESS

Query:  HTYTIKNKDKGKTIL
        H +T+KN DKGK ++
Subjt:  HTYTIKNKDKGKTIL
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTT
TGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGC
TCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGAC
AAAGGGAAGACGATTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCACCCTTTGAGGTCGCAAAGAATATTTGGGAACAACTGTCAAAGCCACCAAAAGGTGGAATTATAATAAAAGAAAATCCTGTGATTGATGAGCATAGTTTGTCCTT
TGAATGTTCAAGTGAGGAGATGCCTCACCCAAATATAATGTCAGTAATGGTGACTGACGTGGATACAAGTGAAGATAGAATGACGGAGCTTGAAAATAAGGTTAACATGC
TCCTGGAGGCAGTTGGAGAAAGGGATTATAAGATTGCATCCATGAAAAGTCATATCGAAAGTCATGACGCTGCTGAATCAAGTCACACATATACCATCAAGAATAAGGAC
AAAGGGAAGACGATTTTGTAA
Protein sequenceShow/hide protein sequence
MPPFEVAKNIWEQLSKPPKGGIIIKENPVIDEHSLSFECSSEEMPHPNIMSVMVTDVDTSEDRMTELENKVNMLLEAVGERDYKIASMKSHIESHDAAESSHTYTIKNKD
KGKTIL