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PI0012478 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012478
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase
Genome locationchr06:18122016..18122267
RNA-Seq ExpressionPI0012478
SyntenyPI0012478
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR000953 - Chromo/chromo shadow domain
IPR016197 - Chromo-like domain superfamily
IPR023780 - Chromo domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036830.1 reverse transcriptase [Cucumis melo var. makuwa]2.9e-2776.83Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q NV+ R +IDL+QKEDKDVEEIL +RV++GRRP RRIHE+LVKWKNL MEETSWE VEDLEAWKQKI++F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

KAA0057858.1 reverse transcriptase [Cucumis melo var. makuwa]6.4e-2775.61Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VEDLEAWKQKI++F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

KAA0060777.1 reverse transcriptase [Cucumis melo var. makuwa]4.9e-2779.76Show/hide
Query:  MQHN--VIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        MQ N  VIVR +IDL+QKEDKDVEEIL +RV+KGRRPTRRIHE+LVKWKNL +EE+SWE VEDLEAW QKI+EF+LRQSTGTST
Subjt:  MQHN--VIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

TYJ98540.1 reverse transcriptase [Cucumis melo var. makuwa]6.4e-2775.61Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VEDLEAWKQKI++F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

TYK04336.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Cucumis melo var. makuwa]2.2e-2776.83Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VEDLEAWKQKIK+F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

TrEMBL top hitse value%identityAlignment
A0A5A7T0E2 Reverse transcriptase1.4e-2776.83Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q NV+ R +IDL+QKEDKDVEEIL +RV++GRRP RRIHE+LVKWKNL MEETSWE VEDLEAWKQKI++F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

A0A5A7URR9 Reverse transcriptase3.1e-2775.61Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VEDLEAWKQKI++F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

A0A5A7V1R7 Reverse transcriptase2.4e-2779.76Show/hide
Query:  MQHN--VIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        MQ N  VIVR +IDL+QKEDKDVEEIL +RV+KGRRPTRRIHE+LVKWKNL +EE+SWE VEDLEAW QKI+EF+LRQSTGTST
Subjt:  MQHN--VIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

A0A5D3BFH0 Reverse transcriptase3.1e-2775.61Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VEDLEAWKQKI++F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

A0A5D3C1P4 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase1.1e-2776.83Show/hide
Query:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST
        +Q N++ R  IDL+QKEDKDVEEIL +RV++GRRPTRRIHE+LVKWKNL +EETSWE VEDLEAWKQKIK+F+LRQ TGTST
Subjt:  MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTST

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGCACAACGTCATCGTTCGATCAAGCATCGACCTGAATCAGAAAGAAGACAAAGATGTCGAAGAAATCCTTGTCGATCGAGTAAAGAAGGGTAGAAGGCCCACGAG
GAGAATCCACGAATTCCTGGTCAAGTGGAAGAACCTCCTCATGGAAGAAACTAGTTGGGAATGTGTCGAAGACCTAGAAGCATGGAAGCAGAAGATTAAAGAGTTCCAGC
TTCGCCAGTCGACAGGGACGTCAACTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCAGCACAACGTCATCGTTCGATCAAGCATCGACCTGAATCAGAAAGAAGACAAAGATGTCGAAGAAATCCTTGTCGATCGAGTAAAGAAGGGTAGAAGGCCCACGAG
GAGAATCCACGAATTCCTGGTCAAGTGGAAGAACCTCCTCATGGAAGAAACTAGTTGGGAATGTGTCGAAGACCTAGAAGCATGGAAGCAGAAGATTAAAGAGTTCCAGC
TTCGCCAGTCGACAGGGACGTCAACTTTTTAA
Protein sequenceShow/hide protein sequence
MQHNVIVRSSIDLNQKEDKDVEEILVDRVKKGRRPTRRIHEFLVKWKNLLMEETSWECVEDLEAWKQKIKEFQLRQSTGTSTF