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PI0012486 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0012486
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr11:13776494..13777321
RNA-Seq ExpressionPI0012486
SyntenyPI0012486
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060725.1 uncharacterized protein E6C27_scaffold72G00120 [Cucumis melo var. makuwa]6.1e-4048.98Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV  E    L  SM   LG L VRY G+PLL+GR R  DC PLIQRIT  I+SW+AR LSF   L L   ++  +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
        L SYLWRG+E+GR G KVAWV+VC P  +G L    G       G I+ Q+GERV +DAAS RE RLS+FIGLDGEW+WPR   EL++LW++VQ V
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

KAA0062318.1 uncharacterized protein E6C27_scaffold154G00690 [Cucumis melo var. makuwa]9.8e-3035.16Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMR-------------------LIGF
        + VAGV+ E    L   M    G L VRY G+PLL+GR R  D  PLIQRIT RI+SW+AR LSFA RL L   ++R                   +   
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMR-------------------LIGF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKG------------------------------------VLIFGRG---------------------------
        L SYLWRG+E+GR G KVAWVDVC P  +G                                     ++ GR                            
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKG------------------------------------VLIFGRG---------------------------

Query:  ---------------------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
                             G+I+ Q+GERV++DAAS R+ RLS+FI  DGEW WPR   EL++LWE+VQ V
Subjt:  ---------------------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

TYK12108.1 non-LTR retroelement reverse transcriptase-like protein [Cucumis melo var. makuwa]9.2e-2839.91Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV+ E    L   M    G L VRY G+PLL+GR R  DC P+IQRIT RI+SW AR LSFA RL L   ++R +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAK---------------VAWVDVCRPLMKGVLIF------GRG--------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWR
        L SYLWR        +                VAWV+    ++KG  ++      GR         G+I+ Q+GERV++DAAS RE RLS+FIG +GEW 
Subjt:  LMSYLWRGEEDGRQGAK---------------VAWVDVCRPLMKGVLIF------GRG--------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWR

Query:  WPRAFWELLELWEKVQGV
        W R F EL+ LW++VQ V
Subjt:  WPRAFWELLELWEKVQGV

XP_016902060.1 PREDICTED: uncharacterized protein LOC103496880 [Cucumis melo]6.1e-4048.98Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV  E    L  SM   LG L VRY G+PLL+GR R  DC PLIQRIT  I+SW+AR LSF   L L   ++  +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
        L SYLWRG+E+GR G KVAWV+VC P  +G L    G       G I+ Q+GERV +DAAS RE RLS+FIGLDGEW+WPR   EL++LW++VQ V
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

XP_031737043.1 uncharacterized protein LOC116402131 [Cucumis sativus]1.8e-2833.08Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + + GV+      L  +M  ++G L VRY G+PLL GR +  DC PLIQRIT RI+SWSAR LSFA RL L   ++R +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRP-----------------------------------------LMKGVLIFG------------------------
        L SYLWRG+E+GR GAKVAW +VC P                                         ++KG  + G                        
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRP-----------------------------------------LMKGVLIFG------------------------

Query:  ------------RGGSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
                    +GG+II+Q GERV++DA S R+ RL +F+  DG+WRWP    +L+++W+ +QGV
Subjt:  ------------RGGSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

TrEMBL top hitse value%identityAlignment
A0A1S4E258 uncharacterized protein LOC1034968803.0e-4048.98Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV  E    L  SM   LG L VRY G+PLL+GR R  DC PLIQRIT  I+SW+AR LSF   L L   ++  +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
        L SYLWRG+E+GR G KVAWV+VC P  +G L    G       G I+ Q+GERV +DAAS RE RLS+FIGLDGEW+WPR   EL++LW++VQ V
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

A0A5A7UV01 F17F8.51.3e-2733.58Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV+ E    L   M    G L +RY G+PLL+GR R  D  PLIQRIT RI+SW+AR LSFA RL L   ++R +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPL------------------------------------MKGVLIFGR----------------------------
        L+SYLWRG+E+GR G KVAWVDVC P                                     +K  ++ GR                            
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPL------------------------------------MKGVLIFGR----------------------------

Query:  --------------------GGSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGVG
                            G +I+ Q+GERV++DAAS RE RLS+FI  DGEW WPR  + +   WE V+  G
Subjt:  --------------------GGSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGVG

A0A5A7V3Z0 Reverse transcriptase domain-containing protein4.7e-3035.16Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMR-------------------LIGF
        + VAGV+ E    L   M    G L VRY G+PLL+GR R  D  PLIQRIT RI+SW+AR LSFA RL L   ++R                   +   
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMR-------------------LIGF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKG------------------------------------VLIFGRG---------------------------
        L SYLWRG+E+GR G KVAWVDVC P  +G                                     ++ GR                            
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKG------------------------------------VLIFGRG---------------------------

Query:  ---------------------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
                             G+I+ Q+GERV++DAAS R+ RLS+FI  DGEW WPR   EL++LWE+VQ V
Subjt:  ---------------------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

A0A5A7V4C1 Reverse transcriptase domain-containing protein3.0e-4048.98Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV  E    L  SM   LG L VRY G+PLL+GR R  DC PLIQRIT  I+SW+AR LSF   L L   ++  +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV
        L SYLWRG+E+GR G KVAWV+VC P  +G L    G       G I+ Q+GERV +DAAS RE RLS+FIGLDGEW+WPR   EL++LW++VQ V
Subjt:  LMSYLWRGEEDGRQGAKVAWVDVCRPLMKGVLIFGRG-------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGV

A0A5D3CLU1 Non-LTR retroelement reverse transcriptase-like protein4.4e-2839.91Show/hide
Query:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF
        + VAGV+ E    L   M    G L VRY G+PLL+GR R  DC P+IQRIT RI+SW AR LSFA RL L   ++R +                     
Subjt:  MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLI-------------------GF

Query:  LMSYLWRGEEDGRQGAK---------------VAWVDVCRPLMKGVLIF------GRG--------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWR
        L SYLWR        +                VAWV+    ++KG  ++      GR         G+I+ Q+GERV++DAAS RE RLS+FIG +GEW 
Subjt:  LMSYLWRGEEDGRQGAK---------------VAWVDVCRPLMKGVLIF------GRG--------GSIIRQMGERVVFDAASSRETRLSEFIGLDGEWR

Query:  WPRAFWELLELWEKVQGV
        W R F EL+ LW++VQ V
Subjt:  WPRAFWELLELWEKVQGV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G24255.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein4.7e-1436.92Show/hide
Query:  VAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHL-------------------RVCIMRLIGFLM
        +AGV       +  S   A G L VRY G+PLL+ +    D  PL+++I  RI  W+AR LSFA RL L                     CI  +     
Subjt:  VAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHL-------------------RVCIMRLIGFLM

Query:  SYLWRGEEDGRQGAKVAWVDVCRPLMKGVL
        S+LW G E   + AKVAW DVC P  +G L
Subjt:  SYLWRGEEDGRQGAKVAWVDVCRPLMKGVL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTGTTGCGGGGGTTGATAGGGAGGGTGATTATGTGTTGCCAGATAGTATGGTGCTTGCACTGGGTACTCTTCTTGTTCGTTACCAAGGTATTCCCTTACTCTCTGG
TAGACAGCGGTATTGGGATTGTACGCCTCTTATCCAGCGTATTACTAGACGGATTCAGTCTTGGTCAGCTAGAGCTTTGTCCTTTGCTAGGAGACTTCATCTGCGGGTGT
GCATCATGAGGTTGATAGGCTTTTTGATGTCGTATCTTTGGAGGGGTGAGGAGGATGGGAGACAGGGTGCAAAGGTTGCTTGGGTGGATGTGTGTCGCCCGTTGATGAAG
GGAGTCTTAATATTTGGGAGGGGAGGTTCGATCATTCGACAAATGGGAGAAAGGGTGGTGTTTGATGCTGCAAGTAGTAGGGAGACTAGGCTTTCTGAGTTCATTGGCTT
GGATGGTGAGTGGAGGTGGCCGAGGGCTTTTTGGGAGTTACTTGAGTTGTGGGAGAAGGTTCAGGGCGTGGGTTTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGATTGTTGCGGGGGTTGATAGGGAGGGTGATTATGTGTTGCCAGATAGTATGGTGCTTGCACTGGGTACTCTTCTTGTTCGTTACCAAGGTATTCCCTTACTCTCTGG
TAGACAGCGGTATTGGGATTGTACGCCTCTTATCCAGCGTATTACTAGACGGATTCAGTCTTGGTCAGCTAGAGCTTTGTCCTTTGCTAGGAGACTTCATCTGCGGGTGT
GCATCATGAGGTTGATAGGCTTTTTGATGTCGTATCTTTGGAGGGGTGAGGAGGATGGGAGACAGGGTGCAAAGGTTGCTTGGGTGGATGTGTGTCGCCCGTTGATGAAG
GGAGTCTTAATATTTGGGAGGGGAGGTTCGATCATTCGACAAATGGGAGAAAGGGTGGTGTTTGATGCTGCAAGTAGTAGGGAGACTAGGCTTTCTGAGTTCATTGGCTT
GGATGGTGAGTGGAGGTGGCCGAGGGCTTTTTGGGAGTTACTTGAGTTGTGGGAGAAGGTTCAGGGCGTGGGTTTCTGA
Protein sequenceShow/hide protein sequence
MIVAGVDREGDYVLPDSMVLALGTLLVRYQGIPLLSGRQRYWDCTPLIQRITRRIQSWSARALSFARRLHLRVCIMRLIGFLMSYLWRGEEDGRQGAKVAWVDVCRPLMK
GVLIFGRGGSIIRQMGERVVFDAASSRETRLSEFIGLDGEWRWPRAFWELLELWEKVQGVGF